Glyma20g10240 - SoyBase

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Report for Sequence Feature Glyma20g10240

Feature Type:	gene_model
Chromosome:	Gm20
Start:	14290180
stop:	14297142
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g10240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42250	AT	Annotation by Michelle Graham. TAIR10: Zinc-binding alcohol dehydrogenase family protein \| chr5:16894087-16897450 FORWARD LENGTH=390	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG0022	KOG	Alcohol dehydrogenase, class III	JGI		ISS
PTHR11695	Panther	ALCOHOL DEHYDROGENASE RELATED	JGI		ISS
PTHR11695:SF4	Panther	ARYL-ALCOHOL DEHYDROGENASE	JGI		ISS
PF00107	PFAM	Zinc-binding dehydrogenase	JGI		ISS
PF08240	PFAM	Alcohol dehydrogenase GroES-like domain	JGI		ISS
UniRef100_G7J607	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alcohol dehydrogenase-like protein n=1 Tax=Medicago truncatula RepID=G7J607_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NE10	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NE10_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g10240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g10240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g050300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g10240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g10240

Limit To All Plant Sequences

>Glyma20g10240.2   sequence type=transcript   gene model=Glyma20g10240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCACTGTTCGCTATGAAAGATGACAAACAGGCTCCAGTTCCTGCTTCTACAACCGAAGGACAACCTATACGATGTAAAGCGGCGGTTTCTAGAAGAGCTGGTGAGCCGTTGGTTATTGAGGACATCATTGTGGCGCCGCCAAAGCCTCGTGAGGCTCGGATTCGTATTATTTGTTCCTCTCTCTGCCACAGCGACATCACACTTCGGAACCTTCAGGACCCTCCTGCCATTTTCCCAAGGATTCTAGGTCATGAGGCAACTGGGGTTGTGGAAAGTGTTGGGAAGGATGTAACTGAAGTTACAAAAGGTGATGTGGTAATTCCAGTTATCCTACCAGAATGTGGGGAGTGCATAGATTGCAAATCAACCAAGAGCAACCGGTGCACTAATTTTCCTTTCAAGGTGTCTCCTTGGATGCCTCGAGATGGCACCACAAGATTCACTGGCCAAAATGGAGAGATCATATACCATTTCTTGTTTATTTCAAGTTTCAGTGAGTACACTGTGGTGGACATTGCTAATCTGATAAAGATTGATCCAGAAATTCCTCCTGACAGAGCATGCCTTCTCGGATGTGGTGTTTCAACAGGGGTAGGTGCTGCTTGGAGAACTGCAGGTGTGGAACCCGGGTCAACAGTAGCTATTTTTGGGTTGGGATCTATTGGATTAGCTGTTGCAGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATAGGTGTGGACATCAACCCAGAAAAGTTTGAAATTGGAAAGAAGTTTGGAGTCACAGACTTTGTCAATGCTGGAGAATGTGGGGGCAAACCTGTTGGCCAGGTTATCATAGAGATAACTGATGGGGGAGCGGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTTTAGGAGTGGACAAGCCCGGAGCTAGGATAAACCTCAGTTCTTACGAGGTCCTTCATGATGGAAAGAGCCTCATGGGATCCTTATTTGGAGGTCTCAAACCCAAGTCTCATGTACCCATTCTCCTTAAACGTTACATGGACAAGTTGGATAAATTTGTCACTCATGAGGTGGAGTTTAAGGACATCAATAAAGCTTTTGATTTATTGAGTAAAGGAGAGTGTCTTCGATGTGTGATTTGGATGGATAAATGAGTACATTGTTATGTATTCCTAGTCCTTGAATCATGATTTGCAACATGAAAATGTTGAAGTGTGCTTTTTCCCTTTCGTATTTGATTAAAACTTATTCAATAAAGCAGAGCTGCTATCGTATTGCACTGCAAATGCACTTGAAGCCAGTAAAGTAATTAATAGGGGAGATAATAGTGGTCCTTGTTGCTCCAAAGTGTTTTAGTCTGTATAATCCAGAAACAGCATCATTTGGTATTTCCCATTCTATGGTAGCTAAACCATGCAAGGAACTATTATCTACTTTCCACCTGAAAAACAAGCTTAAATCATCATCATCGTATACAGAAATCCATCTTTCCTCTTGAAGCCTCTCCACCACTGCAAATGAGCCTTCTGTCAGAAGGTCATATCTTGGATTGGAACTCCAGAATGTAGCCTTGGTGTATCTCCCTTTGTAAAATAGCCTCTTTTTGGTAAGGCTTTGTCTTACTTGAGTAAGAAGCTGATTTGTACAGATGAGAGATCAAGTGGAGAAGGACCTTTTATAGTGATGTTCTCTCCTTTAGCCATTGCCTGTGCTAGTTTCTTGAATTCTTGGATGTATGCTGATAATGTGAGGACCATACAGTGTTGAAGCAGCCTGCAAATCATATTATTACTTATTAGTAATAATTTAGATATAGTTTGTCTCGAAGGTAAAGCCTAAAAGCTATGGTAGCATGTGCTGCTTGCTTATGCCAGATACAAGTATGGTATAATGTCAGGGTCATAAAGAACACAAGTGCATGTTTGCATATGATTAATTTTGGGAAATAATTGTTGTTTTTCCT

Coding sequences of Glyma20g10240

Limit To All Plant Sequences

>Glyma20g10240.1   sequence type=CDS   gene model=Glyma20g10240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGATGACAAACAGGCTCCAGTTCCTGCTTCTACAACCGAAGGACAACCTATACGATGTAAAGCGGCGGTTTCTAGAAGAGCTGGTGAGCCGTTGGTTATTGAGGACATCATTGTGGCGCCGCCAAAGCCTCGTGAGGCTCGGATTCGTATTATTTGTTCCTCTCTCTGCCACAGCGACATCACACTTCGGAACCTTCAGGACCCTCCTGCCATTTTCCCAAGGATTCTAGGTCATGAGGCAACTGGGGTTGTGGAAAGTGTTGGGAAGGATGTAACTGAAGTTACAAAAGGTGATGTGGTAATTCCAGTTATCCTACCAGAATGTGGGGAGTGCATAGATTGCAAATCAACCAAGAGCAACCGGTGCACTAATTTTCCTTTCAAGGTGTCTCCTTGGATGCCTCGAGATGGCACCACAAGATTCACTGGCCAAAATGGAGAGATCATATACCATTTCTTGTTTATTTCAAGTTTCAGTGAGTACACTGTGGTGGACATTGCTAATCTGATAAAGATTGATCCAGAAATTCCTCCTGACAGAGCATGCCTTCTCGGATGTGGTGTTTCAACAGGGGTAGGTGCTGCTTGGAGAACTGCAGGTGTGGAACCCGGGTCAACAGTAGCTATTTTTGGGTTGGGATCTATTGGATTAGCTGTTGCAGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATAGGTGTGGACATCAACCCAGAAAAGTTTGAAATTGGAAAGAAGTTTGGAGTCACAGACTTTGTCAATGCTGGAGAATGTGGGGGCAAACCTGTTGGCCAGGTTATCATAGAGATAACTGATGGGGGAGCGGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTTTAGGAGTGGACAAGCCCGGAGCTAGGATAAACCTCAGTTCTTACGAGGTCCTTCATGATGGAAAGAGCCTCATGGGATCCTTATTTGGAGGTCTCAAACCCAAGTCTCATGTACCCATTCTCCTTAAACGTTACATGGACAAGGAATTGCAGTTGGATAAATTTGTCACTCATGAGGTGGAGTTTAAGGACATCAATAAAGCTTTTGATTTATTGAGTAAAGGAGAGTGTCTTCGATGTGTGATTTGGATGGATAAATGA

>Glyma20g10240.2   sequence type=CDS   gene model=Glyma20g10240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGATGACAAACAGGCTCCAGTTCCTGCTTCTACAACCGAAGGACAACCTATACGATGTAAAGCGGCGGTTTCTAGAAGAGCTGGTGAGCCGTTGGTTATTGAGGACATCATTGTGGCGCCGCCAAAGCCTCGTGAGGCTCGGATTCGTATTATTTGTTCCTCTCTCTGCCACAGCGACATCACACTTCGGAACCTTCAGGACCCTCCTGCCATTTTCCCAAGGATTCTAGGTCATGAGGCAACTGGGGTTGTGGAAAGTGTTGGGAAGGATGTAACTGAAGTTACAAAAGGTGATGTGGTAATTCCAGTTATCCTACCAGAATGTGGGGAGTGCATAGATTGCAAATCAACCAAGAGCAACCGGTGCACTAATTTTCCTTTCAAGGTGTCTCCTTGGATGCCTCGAGATGGCACCACAAGATTCACTGGCCAAAATGGAGAGATCATATACCATTTCTTGTTTATTTCAAGTTTCAGTGAGTACACTGTGGTGGACATTGCTAATCTGATAAAGATTGATCCAGAAATTCCTCCTGACAGAGCATGCCTTCTCGGATGTGGTGTTTCAACAGGGGTAGGTGCTGCTTGGAGAACTGCAGGTGTGGAACCCGGGTCAACAGTAGCTATTTTTGGGTTGGGATCTATTGGATTAGCTGTTGCAGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATAGGTGTGGACATCAACCCAGAAAAGTTTGAAATTGGAAAGAAGTTTGGAGTCACAGACTTTGTCAATGCTGGAGAATGTGGGGGCAAACCTGTTGGCCAGGTTATCATAGAGATAACTGATGGGGGAGCGGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTTTAGGAGTGGACAAGCCCGGAGCTAGGATAAACCTCAGTTCTTACGAGGTCCTTCATGATGGAAAGAGCCTCATGGGATCCTTATTTGGAGGTCTCAAACCCAAGTCTCATGTACCCATTCTCCTTAAACGTTACATGGACAAGTTGGATAAATTTGTCACTCATGAGGTGGAGTTTAAGGACATCAATAAAGCTTTTGATTTATTGAGTAAAGGAGAGTGTCTTCGATGTGTGATTTGGATGGATAAATGA

Predicted protein sequences of Glyma20g10240

Limit To All Plant Sequences

>Glyma20g10240.1   sequence type=predicted peptide   gene model=Glyma20g10240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDDKQAPVPASTTEGQPIRCKAAVSRRAGEPLVIEDIIVAPPKPREARIRIICSSLCHSDITLRNLQDPPAIFPRILGHEATGVVESVGKDVTEVTKGDVVIPVILPECGECIDCKSTKSNRCTNFPFKVSPWMPRDGTTRFTGQNGEIIYHFLFISSFSEYTVVDIANLIKIDPEIPPDRACLLGCGVSTGVGAAWRTAGVEPGSTVAIFGLGSIGLAVAEGARLCGATRIIGVDINPEKFEIGKKFGVTDFVNAGECGGKPVGQVIIEITDGGADYCFECVGMASLVHEAYASCRKGWGKTIVLGVDKPGARINLSSYEVLHDGKSLMGSLFGGLKPKSHVPILLKRYMDKELQLDKFVTHEVEFKDINKAFDLLSKGECLRCVIWMDK*

>Glyma20g10240.2   sequence type=predicted peptide   gene model=Glyma20g10240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDDKQAPVPASTTEGQPIRCKAAVSRRAGEPLVIEDIIVAPPKPREARIRIICSSLCHSDITLRNLQDPPAIFPRILGHEATGVVESVGKDVTEVTKGDVVIPVILPECGECIDCKSTKSNRCTNFPFKVSPWMPRDGTTRFTGQNGEIIYHFLFISSFSEYTVVDIANLIKIDPEIPPDRACLLGCGVSTGVGAAWRTAGVEPGSTVAIFGLGSIGLAVAEGARLCGATRIIGVDINPEKFEIGKKFGVTDFVNAGECGGKPVGQVIIEITDGGADYCFECVGMASLVHEAYASCRKGWGKTIVLGVDKPGARINLSSYEVLHDGKSLMGSLFGGLKPKSHVPILLKRYMDKLDKFVTHEVEFKDINKAFDLLSKGECLRCVIWMDK*

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