Glyma20g09810 - SoyBase

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Report for Sequence Feature Glyma20g09810

Feature Type:	gene_model
Chromosome:	Gm20
Start:	13608091
stop:	13616257
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g09810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14940	AT	Annotation by Michelle Graham. TAIR10: phosphoenolpyruvate carboxylase 3 \| chr3:5025584-5029476 FORWARD LENGTH=968	SoyBase	E_val: 0	ISS
GO:0006099	GO-bp	Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0015977	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbon fixation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008964	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoenolpyruvate carboxylase activity	SoyBase	N/A	ISS
PF00311	PFAM	Phosphoenolpyruvate carboxylase	JGI		ISS
UniRef100_Q02909	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphoenolpyruvate carboxylase, housekeeping isozyme n=2 Tax=Glycine max RepID=CAPP1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q02909	UniRef	Annotation by Michelle Graham. Best UniRef hit: Phosphoenolpyruvate carboxylase, housekeeping isozyme n=2 Tax=Glycine max RepID=CAPP1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g09810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g09810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g161300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g09810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g09810

Limit To All Plant Sequences

>Glyma20g09810.1   sequence type=CDS   gene model=Glyma20g09810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAACAGGAACTTGGAAAAGATGGCATCGATTGATGCTCAGCTTCGGCTGTTGGTTCCGGCCAAAGTGAGTGAGGATGACAAACTGGTTGAGTATGATGCTTTGCTTTTGGATCGGTTCCTTGATATTCTTCAGGATTTACATGGGGAGGATCTGAAAGAAACGGTTCAAGAGGTGTATGAGCTTTCTGCTGAGTATGAAGGTAAGCATGACCCAAAGAAACTAGAGGAACTTGGAAATCTGATAACTAGTTTGGATGCTGGAGATTCCATTGTGGTTGCCAAGTCCTTTTCCCACATGCTTAACTTGGCCAACTTAGCCGAAGAGGTCCAAATTGCCCACAGTCGAAGGAACAAGTTGAAGAAAGGTGATTTTGCTGATGAAAACAATGCCACCACTGAATCAGACATTGAAGAAACTCTAAAGAAACTTGTGGTGGATATGAAGAAGTCTCCTCAGGAAGTTTTTGATGCACTTAAAAACCAGACTGTTGATCTGGTTCTTACTGCTCATCCTACTCAATCTGTCCGTAGGTCTTTGCTTCAAAAACATGGAAGGATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAGATCCAAGCTGCATTCCGTACTGATGAAATCAGGAGGACCCCTCCAACCCCACAAGATGAGATGAGAGCAGGGATGAGCTACTTCCATGAAACAATTTGGAAGGGTGTACCCACATTTCTACGTCGTGTTGATACAGCTTTGAAGAATATAGGGATCAACGAACGTGTCCCTTATAATGCTCCTCTCATTCAATTTTCTTCTTGGATGGGTGGAGATCGTGATGGCAATCCAAGAGTAACTCCTGAAGTGACCAGAGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTGTACTACTCCCAGATAGAGGATCTTATGTTTGAGCTGTCAATGTGGCGCTGCAATGACGAGCTACGTGTCCGTGCAGATGAACTTAACAGGTCTTCCAAGAAAAATTCAGTCGCAAAACACTACATAGAATTTTGGAAAGCCATTCCTCCAAATGAACCATATCGTGTGCTACTGGGTGAAGTAAGGAATAGGCTTTACCAGACTCGTGAACGCTCACGCCATTTGCTAGCTCACGGATACTCTGACATTCCAGAGGAAGAGACTTTTACCAATGTTGAGGAGTTCTTGGAACCCCTTGAACTCTGTTACAGATCACTCTGTGCTTGTGGCGATCGTGCAATTGCCGATGGAAGCCTTCTAGATTTCTTGAGACAAGTCTCTACTTTCGGACTCTCCCTAGTGAGGCTTGACATAAGGCAAGAGTCAGACCGCCACACAGACGTCTTAGACGCCATCACCAAACATTTAGAAATAGGCTCATACCAGGAATGGTCGGAGGAAAAACGGCAGCAATGGCTTTTATCTGAGTTGAGTGGCAAACGGCCCCTATTCGGCCCTGATCTTCCCCAAACCGAAGAAATCAGAGACGTGTTGGAGACATTCCATGTCATAGCAGAGCTTCCACTAGACAACTTTGGAGCATACATCATCTCAATGGCAACTGCACCTTCTGATGTGCTTGCAGTTGAGCTTCTGCAGCGCGAATGCCATGTCAAGCATCCACTAAGAGTTGTGCCATTGTTTGAGAAGCTAGCTGATCTAGAAGCAGCACCGGCCGCGTTGGCGCGATTGTTCTCTGTAGACTGGTACAGAAACAGGATCAATGGGAAGCAGGAAGTGATGATAGGCTATTCTGATTCTGGCAAAGATGCTGGAAGGTTTTCAGCTGCATGGCAGCTGTATAAGGCTCAGGAGGAGCTTATAATGGTGGCTAAGCAGTATGGTGTGAAGCTGACAATGTTCCATGGTCGTGGAGGGACAGTTGGAAGAGGAGGTGGTCCAACTCACCTTGCTATTCTGTCTCAGCCTCCTGAAACCATTCATGGATCGCTGCGCGTGACTGTCCAAGGTGAAGTTATTGAGCAATCGTTTGGAGAGCAGCACTTGTGCTTCAGAACGCTTCAAAGGTTCACTGCAGCTACTCTAGAACATGGAATGCACCCTCCAATTTCTCCTAAACCGGAATGGAGGGCTTTGATGGATGAGATGGCTGTCATTGCCACTGAGGAGTACCGGTCCATTGTGTTCAAAGAACCACGATTTGTTGAGTATTTCCGCCTGGCCACACCTGAGTTGGAGTACGGGAGGATGAACATTGGAAGTCGACCAGCAAAGAGGAGGCCAAGTGGAGGTATTGAGACACTCCGTGCCATACCTTGGATCTTTGCCTGGACACAAACAAGGTTCCATCTTCCAGTGTGGCTAGGCTTTGGTGCAGCATTCAAACATGTTATTGAGAAGGATGTTAGGAATATTCATGTGCTGCAGGAGATGTACAATCAATGGCCTTTCTTTAGGGTCACTATTGATTTAGTGGAAATGGTGTTTGCCAAAGGAGACCCAGGGATAGCTGCTCTTTATGATAGGCTCCTTGTTTCAGAGGATCTGTGGTCATTTGGGGAGCAGTTGAGGACCATGTACGAAGAAACCAAGGAACTCCTCCTTCAGGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGACTGCGCTTGCGTGATTCTTATATTACTACCCTAAACGTGTGCCAAGCCTACACGTTGAAACGTATCCGTGATCCAAACTATAATGTGAAGCTGCGCCCTCACATCTCCAAAGAGTCTATAGAGATAAGTAAACCTGCTGATGAACTTATAACACTTAACCCAACAAGTGAATATGCACCTGGTTTGGAAGACACCCTCATTCTCACCATGAAGGGTATTGCTGCTGGCTTGCAAAACACTGGCTAA

Predicted protein sequences of Glyma20g09810

Limit To All Plant Sequences

>Glyma20g09810.1   sequence type=predicted peptide   gene model=Glyma20g09810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANRNLEKMASIDAQLRLLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYEGKHDPKKLEELGNLITSLDAGDSIVVAKSFSHMLNLANLAEEVQIAHSRRNKLKKGDFADENNATTESDIEETLKKLVVDMKKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNNLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPTFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVRADELNRSSKKNSVAKHYIEFWKAIPPNEPYRVLLGEVRNRLYQTRERSRHLLAHGYSDIPEEETFTNVEEFLEPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITKHLEIGSYQEWSEEKRQQWLLSELSGKRPLFGPDLPQTEEIRDVLETFHVIAELPLDNFGAYIISMATAPSDVLAVELLQRECHVKHPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIMVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEQHLCFRTLQRFTAATLEHGMHPPISPKPEWRALMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIEKDVRNIHVLQEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEDLWSFGEQLRTMYEETKELLLQVAGHRDLLEGDPYLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYNVKLRPHISKESIEISKPADELITLNPTSEYAPGLEDTLILTMKGIAAGLQNTG*

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