Glyma20g09370 - SoyBase

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Report for Sequence Feature Glyma20g09370

Feature Type:	gene_model
Chromosome:	Gm20
Start:	13269037
stop:	13273180
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g09370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G53300	AT	Annotation by Michelle Graham. TAIR10: tetratricopetide-repeat thioredoxin-like 1 \| chr1:19879726-19882375 FORWARD LENGTH=699	SoyBase	E_val: 0	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009789	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG0907	KOG	Thioredoxin	JGI		ISS
PTHR22904	Panther	CHAPERONE BINDING PROTEIN	JGI		ISS
PF00085	PFAM	Thioredoxin	JGI		ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
UniRef100_B9SE65	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Small glutamine-rich tetratricopeptide repeat-containing protein A, putative n=1 Tax=Ricinus communis RepID=B9SE65_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DC07	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DC07 related cluster n=1 Tax=unknown RepID=UPI000233DC07	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g09370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g09370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g160800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g09370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g09370

Limit To All Plant Sequences

>Glyma20g09370.1   sequence type=CDS   gene model=Glyma20g09370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACATTCCAGGAAACCCGTGTCGTCCGAGTTAGGGTTCACCGAGCGGTTCCGCGACTCACTGAGTTGCTCCGACGACAACACCAACAAGCCCGATTTCCGAGAACTCGATTTGGGTTCACCGGTTTCCACATTGCGGCCACGTCACTACCACAGTGCACCCACTACAACGAGTAGCACTAGTACGAGCACTAGCAGCGGGTCGACCGGGTCGGGTTCGGGTCGAAGCGGAAACAATAACGCGGTTTCCAAGAGATCCCATTCCGGCGAGTTGTCTGGGTCGAGCGAGACCAATAGTCCGACCCGTGTTTCCAAACCGGGTCACCGGAGATCCAATTCGGGTCAGAGCCAGAGATCTCCGTCGTCTTCCTCCTCCTCCGCCGCGGTGAATTCACCGCCTCTGAGCGTTCTCCCGGCCGGGAACATCTGCCCGTCCGGGAGGGTTCTCAAGGCGGCGACCGCAGCGGTGGCGCCCAGCCGGAGCTCCCGGTCGGATGTTCTGGGATCCGGCACGGGGAATTACGGCCACGGGAGCATAATGCGAGGTGGAAAAGGTGGTGGTGGTGGGGATGTGAGGATCGCCGGAGATTCAGCGAAGCGCGTGGATCCGGAGGAGGTGAAGAGGATGGGAAATGCGGAGTATAAGAGAGGGCACTTTGCTGAGGCGTTGTGTTTGTATGATCGGGCAATTGCGATGTCGCCGGGCAATGCCGCTTACCGGAGCAACCGTGCGGCGGCGTTGACCGGGTTGGGACGGCTGCCGGAGGCGGTGAGGGCGTGTGAGGAGGCTGTGGTGTTGGATCCTAATTATGGGAGGGCGCATCAGCGCTTGGCAATGCTGTTTCTCAGGTTAGGACAGGTTGAGGATTCTAGGAAGCGCCTTTGTTATCCTGGGCTGCAGCCAGATCCTGCTGAGTTGCAGAAGTTGCAAATTGTGGAAAAGCATATTAACAAATGTGGTGATGTGCGGAGGATACGAGATTGGAAAAGCGTACTGAGGGAGGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTCTCAAGCAACACCAGATGGATGATGCTGAATCATGTTTATCACAGATTCCCAAAAGCGAGCCACGACCTGGTTCCTTATCACAGGCAAGATTTTTTGGGATGTTTTCCGAGGCTTATTGCTTCTTCGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATTGACCCCCGAAATGTTGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTTGCTAGAGCTCGACTGCGTGGTAATGATCTTTTTAAGTCAGAAAGGTTCACTGAGGCCTGCTCGGCATACGGGGAAGGTTTGAGGCTCGACCCTTCAAACTCTGTCCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTGCAATCAAGCTTTATGCATCCTACCAAATTATACAAAAGCCATTCTTCGAAGGGCTGCCTCAAATAGCAAGCTAGAACGGTGGGAAGAAGCAGTAACAGATTATGAACTTTTGCGGAGAGAACTACCAGACGACAATGAAGTTGCTGAAAATCTGTTTCATGCACAAGTAGCATTAAAGAAATCTCGTGGGGAAGAAGTACATAATTTAAAATTTGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCTTTTTGAAACTGCATCAAACATGCAATGTAAGCAGATATCGCCATTCATGAATACACTATGTAGTCGTCATCCATCTATTAACTTCCTTAAGGTGGATATTCAAACAAGCCCCGCAGTCGCCGCTGCTGAGAATGTTAGGGTTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGAGTGAAGGAAATTATATGTCCTAGTCATGATATGTTGGAACACTCCATTAGGCATTACAGCTTGTAG

Predicted protein sequences of Glyma20g09370

Limit To All Plant Sequences

>Glyma20g09370.1   sequence type=predicted peptide   gene model=Glyma20g09370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHSRKPVSSELGFTERFRDSLSCSDDNTNKPDFRELDLGSPVSTLRPRHYHSAPTTTSSTSTSTSSGSTGSGSGRSGNNNAVSKRSHSGELSGSSETNSPTRVSKPGHRRSNSGQSQRSPSSSSSSAAVNSPPLSVLPAGNICPSGRVLKAATAAVAPSRSSRSDVLGSGTGNYGHGSIMRGGKGGGGGDVRIAGDSAKRVDPEEVKRMGNAEYKRGHFAEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPEAVRACEEAVVLDPNYGRAHQRLAMLFLRLGQVEDSRKRLCYPGLQPDPAELQKLQIVEKHINKCGDVRRIRDWKSVLREVDAAVAAGADSCVQLFMCRAEALLKQHQMDDAESCLSQIPKSEPRPGSLSQARFFGMFSEAYCFFVRAQIEMAFGRFENAVTAAEKASQIDPRNVEVAVLLNNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALCILPNYTKAILRRAASNSKLERWEEAVTDYELLRRELPDDNEVAENLFHAQVALKKSRGEEVHNLKFGGEVEDISGLEQFRAAISLPGVSVVLFETASNMQCKQISPFMNTLCSRHPSINFLKVDIQTSPAVAAAENVRVVPTFKIYKNGSRVKEIICPSHDMLEHSIRHYSL*

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