SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G53290 | AT | Annotation by Michelle Graham. TAIR10: Galactosyltransferase family protein | chr1:19871353-19873251 FORWARD LENGTH=345 | SoyBase | E_val: 2.00E-179 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0008378 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: galactosyltransferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| KOG2288 | KOG | Galactosyltransferases | JGI | ISS | |
| PTHR11214 | Panther | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE | JGI | ISS | |
| PTHR11214:SF4 | Panther | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE-RELATED | JGI | ISS | |
| PF01762 | PFAM | Galactosyltransferase | JGI | ISS | |
| UniRef100_I1NE03 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NE03_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8L7M1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Probable beta-1,3-galactosyltransferase 14 n=1 Tax=Arabidopsis thaliana RepID=B3GTE_ARATH | SoyBase | E_val: 8.00E-177 | ISS |
|
Glyma20g09170 not represented in the dataset |
Glyma20g09170 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g160700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g09170.1 sequence type=CDS gene model=Glyma20g09170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTTCTTCCCCCAAGTCCTACGCCATCTCCTACGCGCGCCAGCCCACGCGCAGATCCACCCTCTACCTCCTCCTCTCCGCCCTCTTCCTCTTCGGAATCGTTGCTTTCCTCGGCCAGATTCGTGGCAGCCGCTGCGTCAACGCGCACCCCCGATCGGTGCGCATCGTTTGGGAACACTCCGCCGGCAACGGTGCCGCCGGTAGTGGGGTCGGCGACGGAGACAGGCATAAGGTGATGGGGTTTGTGGGCATTCAAACCGGGTTCACGTCGGCGGGGAGGAGAGAGTCCTTGAGGAAGACGTGGTTCCCCTCTGATCGCCAAGGACTTCAACGCTTAGAAGAAGCTACTGGGTTGGCTTTTAGGTTTATCATTGGTAGAACAAGTGACAGAGCAAAGATGTCTGCGCTTCAAAAGGAAGTAGCAGAATATGATGATTTCATTTTGCTGGATATACAAGAGGAGTACAGTAAGCTCCCATACAAAACGTTAGCTTTCTTCAAAGCTGCTTATGCTCTTTTTGATGCTGAATTTTATGTCAAAGCTGATGATGACATATATTTAAGGCCAGATCGTCTATCATTACTACTGGCAAAAGAGCGATCTCATCCTCAGACATACATAGGATGTATGAAAAAGGGACCTGTTTTCACTGATCCAAAACTCAAATGGTATGAACCATTGTCACATTTGCTTGGAAAGGAGTATTTTCTTCATGCTTACGGTCCTATATATGTTCTTTCTGCCGATGTTGTCCAAAGCTTGATTGCCCTTAGGAATGACAGTTTCCGGATGTTCAGCAATGAGGATGTTACCATTGGAGCTTGGATGCTTGCAATGAATGTCAACCATGAGAATAATCATGAACTTTGTTCTACAGATTGTACAGCCACATCTATTGCAGTGTGGGATATTCCGAAGTGTTCAGGCCTATGTAATCCAGAAAAGAAAATGTTGGAACTCCATCAAAAGGAAACCTGCTCTAAGAGCCCAACTCTGGAATCAGATGATGAATAG
>Glyma20g09170.1 sequence type=predicted peptide gene model=Glyma20g09170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPSSPKSYAISYARQPTRRSTLYLLLSALFLFGIVAFLGQIRGSRCVNAHPRSVRIVWEHSAGNGAAGSGVGDGDRHKVMGFVGIQTGFTSAGRRESLRKTWFPSDRQGLQRLEEATGLAFRFIIGRTSDRAKMSALQKEVAEYDDFILLDIQEEYSKLPYKTLAFFKAAYALFDAEFYVKADDDIYLRPDRLSLLLAKERSHPQTYIGCMKKGPVFTDPKLKWYEPLSHLLGKEYFLHAYGPIYVLSADVVQSLIALRNDSFRMFSNEDVTIGAWMLAMNVNHENNHELCSTDCTATSIAVWDIPKCSGLCNPEKKMLELHQKETCSKSPTLESDDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
