Glyma20g08765 - SoyBase

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Report for Sequence Feature Glyma20g08765

Feature Type:	gene_model
Chromosome:	Gm20
Start:	12424712
stop:	12429735
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g08765

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G44900	AT	Annotation by Michelle Graham. TAIR10: cation/H+ exchanger 4 \| chr3:16388724-16391360 FORWARD LENGTH=817	SoyBase	E_val: 1.00E-152	ISS
GO:0006812	GO-bp	Annotation by Michelle Graham. GO Biological Process: cation transport	SoyBase	N/A	ISS
GO:0006814	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transport	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0010351	GO-bp	Annotation by Michelle Graham. GO Biological Process: lithium ion transport	SoyBase	N/A	ISS
GO:0035725	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005451	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation transport	SoyBase	N/A	ISS
GO:0015299	GO-mf	Annotation by Michelle Graham. GO Molecular Function: solute:hydrogen antiporter activity	SoyBase	N/A	ISS
GO:0015385	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sodium:hydrogen antiporter activity	SoyBase	N/A	ISS
GO:0016746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups	SoyBase	N/A	ISS
KOG1650	KOG	Predicted K+/H+-antiporter	JGI		ISS
PF00999	PFAM	Sodium/hydrogen exchanger family	JGI		ISS
UniRef100_G7KCS8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: K(+)/H(+) antiporter n=1 Tax=Medicago truncatula RepID=G7KCS8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DC00	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DC00 related cluster n=1 Tax=unknown RepID=UPI000233DC00	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g08765

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g08765 not represented in the dataset	Glyma20g08765 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g08765 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g045400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g08765

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g08765

Limit To All Plant Sequences

>Glyma20g08765.1   sequence type=CDS   gene model=Glyma20g08765   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTTGATCAATCAAACAATCTTCTCTTCAGCCACGTTCGCGTATGACATTCCTCTAAAGAGACATGAGATCTACAACGTGTGCATGAATCAGCCAATGAAGATAATATCTGATGGCATATGGACTCCAGAAAATGGAGCAATACCTTCAGAATCTGCATTCACAGTGCTTGAGCTACAAATAGTTACCATTTTTGTCGTCACGCAAGGCTTTCATTTCATTCTCAAGCGATTAGGGATCCCTTATTTCGTTTCACAAGTAATGGCTGGTTTTCTTCTAGGTCCATCAATTCCCACAGGACCCTTCGAAAAGTACAAGAAGATGCTATTCCCCTTCGGAAGTCCAGACATCCTTAACACGTTGACAGGGTTAGGGTACTCATTCTATCTCTTCATAAACTCAGTTCAAATGGACCTAAGCTTGATAACGAAGACGGGGAAGAAGGGTTGGGTCATTGCAGTTTCCTCCTACGGTATTTCCATATTTGTTGGCTTTATCATGTTGATTTTCTTCCTTCCGACATGGCAAGAGCTCCTCAACGAAGACGTTTCCTCCGTCCTACCCGTGGTCATCATCTCTCAAAGCGGTTGTTCCTTCGCTGTCATCTCATCCTTGCTCAATGACCTCGGAATCCTTAACTCGGAACTCGGACGCCTTGCACTCTCCATAGCTTTCATCACCGATCTCGCAGGTGGAATCGGGGCAGGATTTGGCGCCGACTTTCTGAAAAGCCTAAATTTGGATTTTTCTATCCGTCTTACAAACATGGTAGCATTTTTCATTTACCTAATCTTCGCTCCACTACTTGGGCGTCCAGCAATGAGATGGGTTGTGAAGAACACCCCAGAAGGCAAACCCGTGTCTAAGACTTATATCTATGCCATCGTAGTGTTGTTTTTGGGATTAGGTTTCTTTGCAGGGTATTTCAACCAACCCTTCTTGGTAGGAGCAGTTATATTAGGGCTTGCTGTTCCTGAAGGCCCTCCTTTGGGGTCTGAATTCGTTTCCCAACTTGAGTTGTTCTCCAACTGGTTCTTGACTTCGATTTTCGTCACGTGTAGCACCATGAAGGTCGATCTCAAACAATGTGACTCTCTCTCCTTCGTTATGGTCATATGCTTCTTCGTTATAATGGTCTACTTGATTAAGTTGGTGGTGTGCATGGGAATTTGCCGCTATTGCAAAATGCCCTTCACTGATGGCTTCTGCCTTGCTCTCATTTTGAGCTGCAAAGGTGTTGTTGATATATGCTCCTATGTCCTGGTCTACGATACAATGTCACAAAATAAAGGTACAATAGCTGTTACGATCATCTCAGTGTTGCTTATGGGAACAACTTCGAGGCTTGGTGTGAAGGCATTGTATGACCCTTCAAGGAAATACGCAGGGTACCAAAAAAGGAACATTATGACCTTGAAAAACAACCATGAGCTTAGGGTTGTTGCGTGCATCCACAAGCCATTCCACATGAATCACATAAAAAATATGCTCCAACTTTGTTCCCCAGCACCAGAGAACACACTAGTGGCAGATATTGTGCATGTAATGGAGCTAGTAGGAAGGTCCAATCCAATTTTCATAGCACACAAACTTCAGCACAAAGTGGGGTCCTCCCACAACTACTCTGGGGAACTAATTGTGGCCTTTGATCTTTTTGAACGTGACTATGCTGGTTTTGCCACTGCCAACACCTACACTGCCATATCCCCAACAACTCTAATGCACGAAGATGTTTGTTACCTTGCTTTGGACAAAAATGCAGCCCTAATAGTCCTTCCATTTCATGTGAAATGGGGAGGGGATGGGTCAATTGAGTCAGAAGATAGCAACATTAGGGCACTTAATTCCAAGGTTTTGGAAAGGGCACCTTGCTCAATTGGGATTCTTGTGAACCGTGGCAATTGTGGGTTCAGCTCAAAAAGTTACAAGGTTGCCATGATTTTCTTGGGTGGACCTGATGATAGAGAGGCCTTGTGCTTGGCTAAGAGGTTTTTGAAAAACCCTGAGAATCAGTTGTTTGTGTATAGGTTGCTAGCACATGACCACAATATCTCGGATTGGGAACACATGATTGATAATGAGGAGTTGAGGGAGGTGCGTGGAGCTTATTTTAAACTAGAAAATGTGACATATGAAGAGAGGACTATAGAAGATGCATCTGAGACAACATGTTTCATCAAAGATATAGCGAACAAATTTGATTTTATTGTAGTTGGGAGACGCAATGGGGTCAAAACTTCTCAGACATTTGGGCTGGAAAATTGGACTGAATATTCGGAGTTAGGGGTTGTTGGTGATTTGCTTGCTTCACCGGATATGGAGACTAGGGCTTCAATTTTGGTTGTGCAACAACAACAGTCAAGTTTGTGTCATGATGAGTGA

Predicted protein sequences of Glyma20g08765

Limit To All Plant Sequences

>Glyma20g08765.1   sequence type=predicted peptide   gene model=Glyma20g08765   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLINQTIFSSATFAYDIPLKRHEIYNVCMNQPMKIISDGIWTPENGAIPSESAFTVLELQIVTIFVVTQGFHFILKRLGIPYFVSQVMAGFLLGPSIPTGPFEKYKKMLFPFGSPDILNTLTGLGYSFYLFINSVQMDLSLITKTGKKGWVIAVSSYGISIFVGFIMLIFFLPTWQELLNEDVSSVLPVVIISQSGCSFAVISSLLNDLGILNSELGRLALSIAFITDLAGGIGAGFGADFLKSLNLDFSIRLTNMVAFFIYLIFAPLLGRPAMRWVVKNTPEGKPVSKTYIYAIVVLFLGLGFFAGYFNQPFLVGAVILGLAVPEGPPLGSEFVSQLELFSNWFLTSIFVTCSTMKVDLKQCDSLSFVMVICFFVIMVYLIKLVVCMGICRYCKMPFTDGFCLALILSCKGVVDICSYVLVYDTMSQNKGTIAVTIISVLLMGTTSRLGVKALYDPSRKYAGYQKRNIMTLKNNHELRVVACIHKPFHMNHIKNMLQLCSPAPENTLVADIVHVMELVGRSNPIFIAHKLQHKVGSSHNYSGELIVAFDLFERDYAGFATANTYTAISPTTLMHEDVCYLALDKNAALIVLPFHVKWGGDGSIESEDSNIRALNSKVLERAPCSIGILVNRGNCGFSSKSYKVAMIFLGGPDDREALCLAKRFLKNPENQLFVYRLLAHDHNISDWEHMIDNEELREVRGAYFKLENVTYEERTIEDASETTCFIKDIANKFDFIVVGRRNGVKTSQTFGLENWTEYSELGVVGDLLASPDMETRASILVVQQQQSSLCHDE*

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