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Report for Sequence Feature Glyma20g08690

Feature Type:gene_model
Chromosome:Gm20
Start:12311165
stop:12312567
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g08690
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G44100AT Annotation by Michelle Graham. TAIR10: casein kinase I-like 7 | chr5:17749454-17752285 REVERSE LENGTH=476 SoyBaseE_val: 7.00E-29ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
PTHR11909Panther CASEIN KINASE-RELATED JGI ISS
PTHR11909:SF18Panther CASEIN KINASE JGI ISS
UniRef100_B9SV24UniRef Annotation by Michelle Graham. Most informative UniRef hit: Casein kinase, putative n=1 Tax=Ricinus communis RepID=B9SV24_RICCO SoyBaseE_val: 1.00E-26ISS
UniRef100_UPI000233C06FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C06F related cluster n=1 Tax=unknown RepID=UPI000233C06F SoyBaseE_val: 1.00E-27ISS

Expression Patterns of Glyma20g08690
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g08690 not represented in the dataset
Glyma20g08690 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g08690 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma20g08690
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g08690
>Glyma20g08690.1   sequence type=CDS   gene model=Glyma20g08690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGTGTGTTCCTTGCATAGGGAAAACAAGAACCTTACAGCCACAACACGCTATGCAAGTGTCAACACTCATCTTGGAATTGGAAGTTTTCCCTGGCAAGGACTGAAGGCTAGCACCAAAAAACAAAAATATGACAAAATCAGTGAGACAAAGGTGTCAACTTCCATAGAGTTTGTGTCGTACTTCCACTATTGCTCATCACTGCAATTTGAGGACAAGCCATTCATTAACAGGGTTTCCATCAATGTGCAGTTGTCATTTGTTGATCAAAATTCGCAGGGAAAAAAATTGAACCAAAAAAATTTCCAAATAAATAGCAAAAATCAGCAAAAAAAAAAAAAAAATCTACGACGATTATTATTTACCCGTCTTAGAAGGGGTAGCTCAATTAAGTCGGTTAGGACTTTGACCATCGTAGAAAGGGAGATATACTATGCTCAATCTAAGACA
Predicted protein sequences of Glyma20g08690
>Glyma20g08690.1   sequence type=predicted peptide   gene model=Glyma20g08690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIVCSLHRENKNLTATTRYASVNTHLGIGSFPWQGLKASTKKQKYDKISETKVSTSIEFVSYFHYCSSLQFEDKPFINRVSINVQLSFVDQNSQGKKLNQKNFQINSKNQQKKKKNLRRLLFTRLRRGSSIKSVRTLTIVEREIYYAQSKT






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