SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma20g08690

Feature Type:gene_model
Chromosome:Gm20
Start:12311165
stop:12312567
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G44100AT Annotation by Michelle Graham. TAIR10: casein kinase I-like 7 | chr5:17749454-17752285 REVERSE LENGTH=476 SoyBaseE_val: 7.00E-29ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
PTHR11909Panther CASEIN KINASE-RELATED JGI ISS
PTHR11909:SF18Panther CASEIN KINASE JGI ISS
UniRef100_B9SV24UniRef Annotation by Michelle Graham. Most informative UniRef hit: Casein kinase, putative n=1 Tax=Ricinus communis RepID=B9SV24_RICCO SoyBaseE_val: 1.00E-26ISS
UniRef100_UPI000233C06FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C06F related cluster n=1 Tax=unknown RepID=UPI000233C06F SoyBaseE_val: 1.00E-27ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma20g08690.1   sequence type=CDS   gene model=Glyma20g08690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGTGTGTTCCTTGCATAGGGAAAACAAGAACCTTACAGCCACAACACGCTATGCAAGTGTCAACACTCATCTTGGAATTGGAAGTTTTCCCTGGCAAGGACTGAAGGCTAGCACCAAAAAACAAAAATATGACAAAATCAGTGAGACAAAGGTGTCAACTTCCATAGAGTTTGTGTCGTACTTCCACTATTGCTCATCACTGCAATTTGAGGACAAGCCATTCATTAACAGGGTTTCCATCAATGTGCAGTTGTCATTTGTTGATCAAAATTCGCAGGGAAAAAAATTGAACCAAAAAAATTTCCAAATAAATAGCAAAAATCAGCAAAAAAAAAAAAAAAATCTACGACGATTATTATTTACCCGTCTTAGAAGGGGTAGCTCAATTAAGTCGGTTAGGACTTTGACCATCGTAGAAAGGGAGATATACTATGCTCAATCTAAGACA

>Glyma20g08690.1   sequence type=predicted peptide   gene model=Glyma20g08690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIVCSLHRENKNLTATTRYASVNTHLGIGSFPWQGLKASTKKQKYDKISETKVSTSIEFVSYFHYCSSLQFEDKPFINRVSINVQLSFVDQNSQGKKLNQKNFQINSKNQQKKKKNLRRLLFTRLRRGSSIKSVRTLTIVEREIYYAQSKT







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo