Glyma20g08680 - SoyBase

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Report for Sequence Feature Glyma20g08680

Feature Type:	gene_model
Chromosome:	Gm20
Start:	12268015
stop:	12275123
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g08680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44060	AT	Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant protein, group 2 \| chr2:18226922-18227988 FORWARD LENGTH=325	SoyBase	E_val: 5.00E-165	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009269	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to desiccation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03168	PFAM	Late embryogenesis abundant protein	JGI		ISS
UniRef100_C6T750	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Late-embryogenesis abundant protein 2 n=1 Tax=Glycine max RepID=C6T750_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6T750	UniRef	Annotation by Michelle Graham. Best UniRef hit: Late-embryogenesis abundant protein 2 n=1 Tax=Glycine max RepID=C6T750_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g08680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g08680 not represented in the dataset	Glyma20g08680 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g08680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g044800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g08680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g08680

Limit To All Plant Sequences

>Glyma20g08680.2   sequence type=transcript   gene model=Glyma20g08680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTCTTTGATTTGTTGTGGTTGTGGTTGGATCTTGCCCAACTAATTTGCTTTATCAATTATTATTTAGATATGTCTACATCTGATAAGTCAGAAGTGGTGGAAAGGGGTGCTAAGGATGATGAAAAGCCAAAGGAAGAACATGAGAAGGGTGGATTTCTTGATACAGTGAAGGATTTCATTCAAGACATTGGTGAGAAGATTGAGGGAGCAGTTGGGTTTGGGAAGCCAACTGCAGATGTCACTGGGATACACATTCCATCAATTAATCTTGAGAAGGCAGAGCTAGTTGTTGATGTTCTTATAAAGAACCCGAATCCGGTGCCAATTCCCCTAATTGACATAAACTACTTGGTCGAGAGTGATGGGAGGAAACTAGTTTCGGGATTGATACCAGATTCGGGCACAATCCATGCACATGGAGAGGAGACAGTCAAGATTCCTCTTACTTTGATTTTTGATGACATAAGGAATACCTATGATGATATTAAACCAGGAAGCATCATTCCTTATAGGGTGAAGGTTGATCTCATTGTGGATGTTCCTGTCTTTGGAAGGCTCACTCTACCTTTGGAGAAAACTGGAGAAATCCCCATTCCATACAAGCCTGATATTGATCTCGATAAAATTCAGTTTGAGAGGTTTTCTTTTGAAGAGACAGTTGCTATTCTTCATTTGAAGTTGGACAACAAGAATGACTTTGACCTTGGCCTCAATGCTCTTGATTATGAGGTCTGGCTTGGTGATGTTAGCATTGGAGGAGCAGAACTTGCCAAATCTGCAAAGCTCGTGAAAAGTGGGATTAGTGACATTGATGTTCCAATTACCTTCAGGCCTAAGGATTTTGGCTCTGCTCTTTGGGACATGATTAGAGGAAGGGGGACAGGCTACACTTTTAAAGGACATATTGATGTTGACACTCCCTTTGGAGCAATGAAACTGCCCATCACGAAAGAAGGTGGTACTACCCGTCTCAAGAAGAATGAAGACAGTGGAGATGACGAGGAGTGAAGAAGAAATGGCAGCAAGTTATTAGCATATGTTCTTTTATATACTAGGCCCATTAGAAAGTTAAGTAAAAGGGACTTGAACTTAAAGGCACTAATTCAGAGTTTGATGGTTATTTATCTATCTTGAAAGTTTCAAGTTGACGATTTGATTGTGTATGGTTATGGTTATTTATGTGAATATCAGTTTGGAGTTTGCTCTTCTCTTGAAGCCACGTTCCTGTTAGAGTACATAATTGATATGTTGTCAAAAAATTGTGTCAATTTTTTTAGTCCTAAATAAACTGTGAGTGGTTATGTTACCTTTTCTAATGGTTTAAAGGAAGATGGTGTTGTAGAGTGTTTTGCTATTGATGTCATCTATTAAAAAAAAAAAAGTATGTAATTGTAATACTCAACAATGTATATTCTGTAGATGTTATTCAAACTTTATTATGTGATGTTTAAATTTCATTCAATTGCACAATATTTTTTTTATATGCCATCCATACGTTATGTTTCACTTGATTAGTGC

Coding sequences of Glyma20g08680

Limit To All Plant Sequences

>Glyma20g08680.1   sequence type=CDS   gene model=Glyma20g08680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTACATCTGATAAGTCAGAAGTGGTGGAAAGGGGTGCTAAGGATGATGAAAAGCCAAAGGAAGAACATGAGAAGGGTGGATTTCTTGATACAGTGAAGGATTTCATTCAAGACATTGGTGAGAAGATTGAGGGAGCAGTTGGGTTTGGGAAGCCAACTGCAGATGTCACTGGGATACACATTCCATCAATTAATCTTGAGAAGGCAGAGCTAGTTGTTGATGTTCTTATAAAGAACCCGAATCCGGTGCCAATTCCCCTAATTGACATAAACTACTTGGTCGAGAGTGATGGGAGGAAACTAGTTTCGGGATTGATACCAGATTCGGGCACAATCCATGCACATGGAGAGGAGACAGTCAAGATTCCTCTTACTTTGATTTTTGATGACATAAGGAATACCTATGATGATATTAAACCAGGAAGCATCATTCCTTATAGGGTGAAGGTTGATCTCATTGTGGATGTTCCTGTCTTTGGAAGGCTCACTCTACCTTTGGAGAAAACTGGAGAAATCCCCATTCCATACAAGCCTGATATTGATCTCGATAAAATTCAGTTTGAGAGGTTTTCTTTTGAAGAGACAGTTGCTATTCTTCATTTGAAGTTGGACAACAAGAATGACTTTGACCTTGGCCTCAATGCTCTTGATTATGAGGTCTGGCTTGGTGATGTTAGCATTGGAGGAGCAGAACTTGCCAAATCTGCAAAGCTCGTGAAAAGTGGGATTAGTGACATTGATGTTCCAATTACCTTCAGGCCTAAGGATTTTGGCTCTGCTCTTTGGGACATGATTAGAGGAAGGGGGACAGGCTACACTTTTAAAGGACATATTGATGTTGACACTCCCTTTGGAGCAATGAAACTGCCCATCACGAAAGAAGGTGGTACTACCCGTCTCAAGAAGAATGAAGACAGTGGAGATGACGAGGAGTGA

>Glyma20g08680.2   sequence type=CDS   gene model=Glyma20g08680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTACATCTGATAAGTCAGAAGTGGTGGAAAGGGGTGCTAAGGATGATGAAAAGCCAAAGGAAGAACATGAGAAGGGTGGATTTCTTGATACAGTGAAGGATTTCATTCAAGACATTGGTGAGAAGATTGAGGGAGCAGTTGGGTTTGGGAAGCCAACTGCAGATGTCACTGGGATACACATTCCATCAATTAATCTTGAGAAGGCAGAGCTAGTTGTTGATGTTCTTATAAAGAACCCGAATCCGGTGCCAATTCCCCTAATTGACATAAACTACTTGGTCGAGAGTGATGGGAGGAAACTAGTTTCGGGATTGATACCAGATTCGGGCACAATCCATGCACATGGAGAGGAGACAGTCAAGATTCCTCTTACTTTGATTTTTGATGACATAAGGAATACCTATGATGATATTAAACCAGGAAGCATCATTCCTTATAGGGTGAAGGTTGATCTCATTGTGGATGTTCCTGTCTTTGGAAGGCTCACTCTACCTTTGGAGAAAACTGGAGAAATCCCCATTCCATACAAGCCTGATATTGATCTCGATAAAATTCAGTTTGAGAGGTTTTCTTTTGAAGAGACAGTTGCTATTCTTCATTTGAAGTTGGACAACAAGAATGACTTTGACCTTGGCCTCAATGCTCTTGATTATGAGGTCTGGCTTGGTGATGTTAGCATTGGAGGAGCAGAACTTGCCAAATCTGCAAAGCTCGTGAAAAGTGGGATTAGTGACATTGATGTTCCAATTACCTTCAGGCCTAAGGATTTTGGCTCTGCTCTTTGGGACATGATTAGAGGAAGGGGGACAGGCTACACTTTTAAAGGACATATTGATGTTGACACTCCCTTTGGAGCAATGAAACTGCCCATCACGAAAGAAGGTGGTACTACCCGTCTCAAGAAGAATGAAGACAGTGGAGATGACGAGGAGTGA

Predicted protein sequences of Glyma20g08680

Limit To All Plant Sequences

>Glyma20g08680.1   sequence type=predicted peptide   gene model=Glyma20g08680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTSDKSEVVERGAKDDEKPKEEHEKGGFLDTVKDFIQDIGEKIEGAVGFGKPTADVTGIHIPSINLEKAELVVDVLIKNPNPVPIPLIDINYLVESDGRKLVSGLIPDSGTIHAHGEETVKIPLTLIFDDIRNTYDDIKPGSIIPYRVKVDLIVDVPVFGRLTLPLEKTGEIPIPYKPDIDLDKIQFERFSFEETVAILHLKLDNKNDFDLGLNALDYEVWLGDVSIGGAELAKSAKLVKSGISDIDVPITFRPKDFGSALWDMIRGRGTGYTFKGHIDVDTPFGAMKLPITKEGGTTRLKKNEDSGDDEE*

>Glyma20g08680.2   sequence type=predicted peptide   gene model=Glyma20g08680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTSDKSEVVERGAKDDEKPKEEHEKGGFLDTVKDFIQDIGEKIEGAVGFGKPTADVTGIHIPSINLEKAELVVDVLIKNPNPVPIPLIDINYLVESDGRKLVSGLIPDSGTIHAHGEETVKIPLTLIFDDIRNTYDDIKPGSIIPYRVKVDLIVDVPVFGRLTLPLEKTGEIPIPYKPDIDLDKIQFERFSFEETVAILHLKLDNKNDFDLGLNALDYEVWLGDVSIGGAELAKSAKLVKSGISDIDVPITFRPKDFGSALWDMIRGRGTGYTFKGHIDVDTPFGAMKLPITKEGGTTRLKKNEDSGDDEE*

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