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Report for Sequence Feature Glyma20g08660

Feature Type:gene_model
Chromosome:Gm20
Start:12185463
stop:12185708
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g08660
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G29840AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr2:12732387-12733983 REVERSE LENGTH=293 SoyBaseE_val: 5.00E-14ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR22763Panther RING ZINC FINGER PROTEIN JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_G7J4X3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ring finger protein n=1 Tax=Medicago truncatula RepID=G7J4X3_MEDTR SoyBaseE_val: 6.00E-14ISS
UniRef100_I1NDZ0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NDZ0_SOYBN SoyBaseE_val: 3.00E-44ISS

Expression Patterns of Glyma20g08660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g08660 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma20g08660
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g08660
>Glyma20g08660.2   sequence type=CDS   gene model=Glyma20g08660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGTGTCTATGCATGATTACAAAATGATTCCCGCATCTAGCGAAGCCATCCAGACGTTGTTGAAGAAATCTACGGTTCAAACACAGGATGAGTGTTGTTCCATCTGCTTGGAAGGTTTGGATATTAACGTTTACACAATGCCATGTAATCACATGTTTCATCATCAATGTATTGTGACCTGGTTGCAAAACAGTCATATGTGTCCCTTGTGTCGATACCCTCTACCTCTGCAAAAATTATAA
Predicted protein sequences of Glyma20g08660
>Glyma20g08660.2   sequence type=predicted peptide   gene model=Glyma20g08660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVSMHDYKMIPASSEAIQTLLKKSTVQTQDECCSICLEGLDINVYTMPCNHMFHHQCIVTWLQNSHMCPLCRYPLPLQKL*






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