Glyma20g08610 - SoyBase

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Report for Sequence Feature Glyma20g08610

Feature Type:	gene_model
Chromosome:	Gm20
Start:	12140757
stop:	12142523
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g08610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13580	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L30/L7 family protein \| chr3:4433809-4435109 FORWARD LENGTH=244	SoyBase	E_val: 5.00E-31	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0015934	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PTHR11524	Panther	60S RIBOSOMAL PROTEIN L7	JGI		ISS
PF00327	PFAM	Ribosomal protein L30p/L7e	JGI		ISS
UniRef100_B9RUS1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L7, putative n=1 Tax=Ricinus communis RepID=B9RUS1_RICCO	SoyBase	E_val: 3.00E-29	ISS
UniRef100_F6GXJ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=F6GXJ2_VITVI	SoyBase	E_val: 3.00E-31	ISS

Expression Patterns of Glyma20g08610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g08610 not represented in the dataset	Glyma20g08610 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g08610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma20g08610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g08610

Limit To All Plant Sequences

>Glyma20g08610.1   sequence type=CDS   gene model=Glyma20g08610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACACAATATTAGAAGAAGATGATACAACAATTTTCAATGGTGTATTTCTCAAAGGTAACAAAGCCACAATGAACATGCTGCACATAGTTGAGCCCTATGTGACTTATGGATACCCAAATCTTAAGAGTGTGAAAGAACTTCTTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAAAGGACTTCTCTAATTGACAACTCCATCATTGAGCAGCTATCTGCAAATATCATTTATTGTATTGAGATCACACCACTAGTTTCTAGGATTCCTTCGGCTAGGGAAGCAAAACTTAAAAGGCAAGCATTATATGCTAAAGCTCATTATCGAAGTGAGCCAAGAGACAGAAACAACAACAATAGGGCCAGGGGTCAAAATAGCAAACCAGGGGAATCCTTTTCTGTTATGAAAAAGCCTATATATATGTAA

Predicted protein sequences of Glyma20g08610

Limit To All Plant Sequences

>Glyma20g08610.1   sequence type=predicted peptide   gene model=Glyma20g08610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTILEEDDTTIFNGVFLKGNKATMNMLHIVEPYVTYGYPNLKSVKELLYKRGYGKLNKQRTSLIDNSIIEQLSANIIYCIEITPLVSRIPSAREAKLKRQALYAKAHYRSEPRDRNNNNRARGQNSKPGESFSVMKKPIYM*

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