Glyma20g08550 - SoyBase

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Report for Sequence Feature Glyma20g08550

Feature Type:	gene_model
Chromosome:	Gm20
Start:	12051437
stop:	12056772
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g08550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16860	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:5543834-5546386 FORWARD LENGTH=850	SoyBase	E_val: 1.00E-123	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_B9SC28	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SC28_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KMK9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KMK9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g08550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g08550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g044000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g08550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g08550

Limit To All Plant Sequences

>Glyma20g08550.2   sequence type=CDS   gene model=Glyma20g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCTCCCCCGCATGTCTCTCTCTGCGCCTCTCTCATTCTTCAATATGCCTCCTTTGGAAACCCCATAAATTCCATTCTTCTCTTCCAACACAGCGTTGCATATTCCCGAAGTGCCTTCTTGTCGAACACCCTTATACGAGCCAATTCCATTGCTGGTGTTCTGATTTTGTGGAGGTTCGCAAGGGTAGGGAGGTTCATGGGGTTGCGTTTAAGCTTGGCTTTGATGGGGATGTCTTTGTTGGGAATACCCTTTTGTCCATTTATGGGAATTGTGGGCTTTTTGGTGATGCGATGAAGGTGTTTGATGAAATTCCTGAGGGGGATAAGGTGTCGTGGAATACTGTTATTGGGCTGTGTTCTCTTCATGGGTTTTACGAGGAGGCACTTGGGTTTTTAAGAAAAATGGTTGCGGTCAAACCGGGGATTCAACCAGACTTGGTTACTGTTGCTAGTGTGTTGCCGGTGTGTGCAGAGACTGAGGACGAGGTGATGGTGAGGATCGTGCACTGTTATGCTATGAAGGTTGGCTTGTTGGGCCATGTAAAGGTTGGAAATGCGTTGGTTGATGTTTATGGGAAATGTGGGAGTGAGAAGGCTTCCAAGAAAGTTTTTGATGATATTGATGAGAGGAATGTGGTTTCCTGGAATCCTATTATTACTAGTTTTTCTTTTAGAGGGAAGTATATGGATGCTTTGGATGTATTTAGGTTGATGATTGATGTGGGAATGGGACCAAACTTTGTCACCATTTCTAGTATGCTACATGTGTTAGGAGAATTAGGACTTTTCAAGTTGGGAGCGGAAGTCCATGAAATATTGTTTGTATCTTGGAATGCTATGATTGCAAATTTTGCTCAGAACAGGCTTGAGTATGAAGCTGTAGAATTAGTGAGGCAAATGCAAGCCAAGGGAGAAACCCCCAACAATGTAACCTTCACAAATGTTCTTCCAGTTTGTGCAAGGTCAGGTTTCCTGAATGTTGGAAAAGAAATTCATGCCCAGATTATTCGGGTTGGATCCTCCTTGGATTTGTTTGTCTCTAATGCTCTGACAAAATGTGGATGCATAAACCTTGCTCAGAATGTTTTGAATATTTCTGTCAGGGAAGAAGTTTCCTACAATATACTAATTATAGGCTATTCTCGAACAAATGACAGCTCAGAGTCTCTAAGTTTGTTTTCAGAAATGAGACTCTTGGGCATGAGGCCTGATATTGTTTCATTCATGGGTGTTATATCAGCTTGTGCAAATCTAGCTTCCATAAAACAAGGCAAAGAGGTCCATGGTCTGCTGGTGAGAAAGCTTTTTCACATTCATCTTTTTGCAGTGAACTCACTCTTTGATTTGTATACCAGGTGTGGACGAATAGATCTCGCTACTAAGGTCTTTGATCATATTCAAAACAAGGATGCGGCCTCTTGGAACACTATGATTTTGGGCTATGGTATGCAAGGTGAGTTGAACACTGCAATCAACCTTTTTGAAGCAATGAAGGAAGACAGTGTGGAATATAATTCAGTTTCATTTATTGCGGTTTTGTCTGCGTGTAGCCATGGAGGGCTAATTGGGAAGGGAAGAAAATACTTTAAGATGATGCGCGATCTAAATATTGAACCAACACATACACACTATGCTTGTATGGTTGATCTCCTTGGAAGGGCCGATCTAATGGAAGAAGCTGCAGACCTTATTAGAGGCCTCTCTATTGTACTGGATACTAATATATGGGGTGCATTGCTTGGAGCATGCCGAATACATGGGAACATAGAATTGGGGATGTGGGCAGCCGAACATTTGTTTGAATTAAAGCCTCAGCACTGTGGATACTATATACTCCTTTCAAATATGTATGCAGAAGCTGTAAGATGGGATGAGGCAAACAAGGTTAGGAAATTGATGAAGTCAAGGGGAGCTAAGAAAAATCCAGGTTGCAGTTGGGTTCAAATTGGAGATCAGGTGCATAAATTTCTT

Predicted protein sequences of Glyma20g08550

Limit To All Plant Sequences

>Glyma20g08550.2   sequence type=predicted peptide   gene model=Glyma20g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSPACLSLRLSHSSICLLWKPHKFHSSLPTQRCIFPKCLLVEHPYTSQFHCWCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLSIYGNCGLFGDAMKVFDEIPEGDKVSWNTVIGLCSLHGFYEEALGFLRKMVAVKPGIQPDLVTVASVLPVCAETEDEVMVRIVHCYAMKVGLLGHVKVGNALVDVYGKCGSEKASKKVFDDIDERNVVSWNPIITSFSFRGKYMDALDVFRLMIDVGMGPNFVTISSMLHVLGELGLFKLGAEVHEILFVSWNAMIANFAQNRLEYEAVELVRQMQAKGETPNNVTFTNVLPVCARSGFLNVGKEIHAQIIRVGSSLDLFVSNALTKCGCINLAQNVLNISVREEVSYNILIIGYSRTNDSSESLSLFSEMRLLGMRPDIVSFMGVISACANLASIKQGKEVHGLLVRKLFHIHLFAVNSLFDLYTRCGRIDLATKVFDHIQNKDAASWNTMILGYGMQGELNTAINLFEAMKEDSVEYNSVSFIAVLSACSHGGLIGKGRKYFKMMRDLNIEPTHTHYACMVDLLGRADLMEEAADLIRGLSIVLDTNIWGALLGACRIHGNIELGMWAAEHLFELKPQHCGYYILLSNMYAEAVRWDEANKVRKLMKSRGAKKNPGCSWVQIGDQVHKFL

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