SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G55390 | AT | Annotation by Michelle Graham. TAIR10: ENHANCED DOWNY MILDEW 2 | chr5:22448152-22454414 REVERSE LENGTH=1297 | SoyBase | E_val: 7.00E-18 | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR13863 | Panther | TRANSCRIPTION INTERMEDIARY FACTOR 1 | JGI | ISS | |
| PTHR13863:SF5 | Panther | TRANSCRIPTIONAL INTERMEDIARY FACTOR 1 GAMMA | JGI | ISS | |
| UniRef100_B9SSQ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SSQ5_RICCO | SoyBase | E_val: 2.00E-30 | ISS |
| UniRef100_I1N0G1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0G1_SOYBN | SoyBase | E_val: 3.00E-113 | ISS |
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Glyma20g08470 not represented in the dataset |
Glyma20g08470 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g043500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g08470.1 sequence type=CDS gene model=Glyma20g08470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGACAAGAAGAAACATGATTTTCAATTTTCTGTTTGTAGGCGTTGCCCCAGGTTGTATCATCGCAAATGTTTGCCAAGAGAGATTGCTTTTGATGACATAGAGAGAGTTATATTGAACAAGAACAATATTGACTCAAAAAATTTATTTGGCAAAAAAGCTACTGCTAAGGTTTCTAAACTTCCAGGTAAAATGTCTTCTGGGAAAGTTGGTGACAAGAAGTTTGAAAATATTTCTAGATCAAATATTTCAAGGAAGAAAATAAACAAAGCATCAAGATGTTTGAATGAAAATAAGAGGTCAACAATCTCAAAGGAAACCAAAAAGTCTGACGGTGCAGAAAATAGGCAATCATTGGGTGCAAAATTATTTGCTTTAATGCAGAATAATTCTGAGCATATTAATTCTAGTAATGAGGCTGATGATGTAGCCAACAATACCCTGGTTGTTAAGCCTACTAAAAAGCTGAGTAGCACATTGCCCGCATTAGATGCAGATTCAAAGAGATTGTTTGCTTTGTTTAAAGAAGCTACTTCATCGGTTACTTTGGAGAATGTTGTAAAAGAGCACATATTTGCTGCTACTCATACTCACTCGTTGAAAAGTGTTATGGAGAAGACCATCACATTGGGGAAATTGGAAGGCTCAGTTAAGGCTGTTCGAACAACTCTAAGGATACTAGAGGATGAGCACAATATTCGGGATGCAGAAGCTGTTTGA
>Glyma20g08470.1 sequence type=predicted peptide gene model=Glyma20g08470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDKKKHDFQFSVCRRCPRLYHRKCLPREIAFDDIERVILNKNNIDSKNLFGKKATAKVSKLPGKMSSGKVGDKKFENISRSNISRKKINKASRCLNENKRSTISKETKKSDGAENRQSLGAKLFALMQNNSEHINSSNEADDVANNTLVVKPTKKLSSTLPALDADSKRLFALFKEATSSVTLENVVKEHIFAATHTHSLKSVMEKTITLGKLEGSVKAVRTTLRILEDEHNIRDAEAV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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