SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G48520 | AT | Annotation by Michelle Graham. TAIR10: GLU-ADT subunit B | chr1:17940185-17942272 FORWARD LENGTH=488 | SoyBase | E_val: 3.00E-36 | ISS |
| GO:0006424 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glutamyl-tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0016556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA modification | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0016874 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ligase activity | SoyBase | N/A | ISS |
| GO:0016884 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor | SoyBase | N/A | ISS |
| GO:0050567 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | SoyBase | N/A | ISS |
| PTHR11659 | Panther | GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (MITOCHONDRIAL AND PROKARYOTIC) PET112-RELATED | JGI | ISS | |
| PF02934 | PFAM | GatB/GatE catalytic domain | JGI | ISS | |
| UniRef100_I1K5J4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial 1 n=1 Tax=Glycine max RepID=I1K5J4_SOYBN | SoyBase | E_val: 3.00E-46 | ISS |
| UniRef100_I1K5J4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial 1 n=1 Tax=Glycine max RepID=I1K5J4_SOYBN | SoyBase | E_val: 3.00E-46 | ISS |
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Glyma20g08306 not represented in the dataset |
Glyma20g08306 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g042500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g08306.1 sequence type=CDS gene model=Glyma20g08306 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTCATTTGTTTATGGCAGGTTGAAATAAAAAATTTGAACTCATTTTCATCAGTGATTAGAGCTATTCATTTTGAAATTTCTAGGCAGGTGCAACTCCATAGTGAAGGCCAGGAAGATCAGATAGTACAGGAAACTCCTTTATGGGAAGAAGGCTCTTCTCAGGCTAGTGCTATATTAACAATTGCAACGAGGAAAAAGGAAAGGCTTGGTGATTATCAATATTTTGCAGAACCAGACCTTCCAACAATAATCCTTTCTCAAGAATATGTTGATGGTATAAAAAATTCTTTACCAGAGCTTCTAGAAATTAAGCAGAGAAGATGA
>Glyma20g08306.1 sequence type=predicted peptide gene model=Glyma20g08306 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVICLWQVEIKNLNSFSSVIRAIHFEISRQVQLHSEGQEDQIVQETPLWEEGSSQASAILTIATRKKERLGDYQYFAEPDLPTIILSQEYVDGIKNSLPELLEIKQRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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