Glyma20g08070 - SoyBase

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Report for Sequence Feature Glyma20g08070

Feature Type:	gene_model
Chromosome:	Gm20
Start:	11206169
stop:	11208263
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g08070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G29070	AT	Annotation by Michelle Graham. TAIR10: Phospholipase A2 family protein \| chr4:14322109-14323035 FORWARD LENGTH=259	SoyBase	E_val: 2.00E-88	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B9SJ74	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase A22 n=1 Tax=Ricinus communis RepID=B9SJ74_RICCO	SoyBase	E_val: 7.00E-93	ISS
UniRef100_I1NDW9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NDW9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g08070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g08070

Paralog	Evidence	Comments
Glyma07g35943	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g08070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g041000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g08070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g08070

Limit To All Plant Sequences

>Glyma20g08070.1   sequence type=CDS   gene model=Glyma20g08070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTGGGGTTTCTTGGTAAAATCCCTTGGTTTAATGCTCAATTGAACACAGATTCGGGGAGTAATTCAGTTCCTATCGATACATTCACTGAACAACCTAAACAAGAACTTGGCAATGATTCCAAATTGCCCTTTCTTTCATTGTTTCCTTGGGTGAATCGTGCTGGAGACAAATTTCAAAGGCCATCTACTATCAACAAAGAGTTAAAAAGGCAAGCACGCCGCAGGAATGGTGTAGGAAAAGATGGTGAGGTTAACCCTTTGCGCTTCCGGCCGTATGTGTGTAAGGTTCCATGGCATACAGGGGTTAGAGCATTTCTTTCTCAGTTGTTCCCTCGATATGGACATTACTGTGGACCAAACTGGTCAAGCGGGAAAGACGGAGGATCTCTTGTTTGGGATAGGCGACCGATTGATTGGTTGGATTTCTGCTGTTACTGCCATGATATAGGGTATGATACTCACGATCAAGCGAAGCTGCTGAAGGCCGACTTAGCATTTCTCGAATGTTTGGAAAAGCACCATGGGAGTACTAAAGGAGACCCTCATGTTGCTCCTATTTATAAGACAATGTGTCTTAATGGTCTGAGGAATTTTCTGATACCATACAGAAGGAATATTGTGAATCTACAACAGTTTGGGCAACCTATGATTCAGTTTGGATGGCTAAGCAATTTGAGATGGGGAAGTTGGAACTTTCAGAAAACTCATAGATTGAGCTCAGTGGGAGGAAGTACTGTGTCATAG

Predicted protein sequences of Glyma20g08070

Limit To All Plant Sequences

>Glyma20g08070.1   sequence type=predicted peptide   gene model=Glyma20g08070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLGFLGKIPWFNAQLNTDSGSNSVPIDTFTEQPKQELGNDSKLPFLSLFPWVNRAGDKFQRPSTINKELKRQARRRNGVGKDGEVNPLRFRPYVCKVPWHTGVRAFLSQLFPRYGHYCGPNWSSGKDGGSLVWDRRPIDWLDFCCYCHDIGYDTHDQAKLLKADLAFLECLEKHHGSTKGDPHVAPIYKTMCLNGLRNFLIPYRRNIVNLQQFGQPMIQFGWLSNLRWGSWNFQKTHRLSSVGGSTVS*

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