Glyma20g08060 - SoyBase

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Report for Sequence Feature Glyma20g08060

Feature Type:	gene_model
Chromosome:	Gm20
Start:	11198961
stop:	11203736
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g08060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01430	AT	Annotation by Michelle Graham. TAIR10: Got1/Sft2-like vescicle transport protein family \| chr5:176797-178010 REVERSE LENGTH=140	SoyBase	E_val: 2.00E-80	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1743	KOG	Ferric reductase-like proteins	JGI		ISS
PTHR21493	Panther	CGI-141-RELATED/LIPASE CONTAINING PROTEIN	JGI		ISS
PTHR21493:SF10	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF04178	PFAM	Got1/Sft2-like family	JGI		ISS
UniRef100_C6T0L4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T0L4_SOYBN	SoyBase	E_val: 1.00E-89	ISS
UniRef100_G7IMJ9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vesicle transport protein GOT1B n=1 Tax=Medicago truncatula RepID=G7IMJ9_MEDTR	SoyBase	E_val: 3.00E-77	ISS

Expression Patterns of Glyma20g08060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g08060 not represented in the dataset	Glyma20g08060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g08060

Paralog	Evidence	Comments
Glyma07g35926	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g08060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g040900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g08060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g08060

Limit To All Plant Sequences

>Glyma20g08060.1   sequence type=CDS   gene model=Glyma20g08060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCCTTTGAAATGAATGATCGGAAGAAGATTGGATTGGGATTAACAGGCTTTGGTATATTTTTCTCATTCCTTGGCCTTATCTTCTTCTTTGACAAGGGATTGCTAGCAATGGGAAATATCCTCTTTGTGTCTGGAGTATCCCTGACCATTGGACTGAAATCCACCATGCAGTTCTTCATGAAACGTAGTAATTTCAAGGGAACAATTTCATTTGGGATTGGATTCTTTATTCTTATCTTGGGGTGGCCTATTCTGGGCATGATTGTGGAGTCTTATGGGTTCATTGTACTCTTCAGTGGTTTCTGGCCTACACTGGCTGTTTTCTTGCAGAAAATCCCTGTTCTCGGTTGGTTGTTTCAACAACCATTTGTTCGATCATTATTGGACCGCTACAGAGGCAGACGGGTGCCTGTGTAA

Predicted protein sequences of Glyma20g08060

Limit To All Plant Sequences

>Glyma20g08060.1   sequence type=predicted peptide   gene model=Glyma20g08060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSFEMNDRKKIGLGLTGFGIFFSFLGLIFFFDKGLLAMGNILFVSGVSLTIGLKSTMQFFMKRSNFKGTISFGIGFFILILGWPILGMIVESYGFIVLFSGFWPTLAVFLQKIPVLGWLFQQPFVRSLLDRYRGRRVPV*

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