Glyma20g08040 - SoyBase

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Report for Sequence Feature Glyma20g08040

Feature Type:	gene_model
Chromosome:	Gm20
Start:	11169570
stop:	11176284
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g08040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19400	AT	Annotation by Michelle Graham. TAIR10: Telomerase activating protein Est1 \| chr5:6540603-6544262 FORWARD LENGTH=1059	SoyBase	E_val: 0	ISS
GO:0000184	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	SoyBase	N/A	ISS
GO:0090306	GO-bp	Annotation by Michelle Graham. GO Biological Process: spindle assembly involved in meiosis	SoyBase	N/A	ISS
GO:0000932	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasmic mRNA processing body	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2162	KOG	Nonsense-mediated mRNA decay protein	JGI		ISS
PTHR15696	Panther	SMG-7 (SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7)	JGI		ISS
PF10374	PFAM	Telomerase activating protein Est1	JGI		ISS
UniRef100_G7K338	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Telomerase-binding protein EST1A n=1 Tax=Medicago truncatula RepID=G7K338_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NDW5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1NDW5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g08040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g08040

Paralog	Evidence	Comments
Glyma07g35910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g08040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g040700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g08040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g08040

Limit To All Plant Sequences

>Glyma20g08040.1   sequence type=CDS   gene model=Glyma20g08040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGTAGAAATGGATAAAATGTCTGCTCCTTCATCAAGGGAGCGTGCACAACGCCTCTATGATAAGAACCTTGAATTGGAGAGTAAGCGTCGGAGGTCGGCTAAGGCGCGTGTCCCATCAGATCCTAATGCTTGGCAACAGATACGTGAGAATTATGAAGCAATAATTCTTGAGGATCATGCTTTCTCTGAGCAGCACAATATTGAATATGCTCTTTGGCAGTTGCATTATAAGCGGATTGAGGAGTTTAGGGCATACTTCAGTGCTGCTCTTTCTTCTACAAATGCAAACTCATCTCAGGGAGGGAAAGGTCCCGCGCGACCTGATCGGATTACTAAAATAAGGCTACAATTTAAGACTTTCCTTTCAGAAGCAACTGGATTTTACCATGATCTTATTACGAAAATCAGAGCTAAGTATGGTCTTCCTCTTGGTTACTTTGAGGATTCAGAGAAAGATGGAAAGAAATCTGCTGAGATGAAGAAAGGTTTAGTAGCTTGTCATCGTTGTCTGATATACTTGGGTGATCTTGCTCGTTATAAAGGAATGTATGGTGAAGGTGACTCAATTAACCGGGAGTTCACCGCAGCTTCTAGTTATTACTTGCAAGCTGCATCACTTTGGCCTTCTAGTGGGAACCCCCATCATCAGCTTGCTTTGTTGGCTTCATATTCTGGGGATGAACTGGTGGCTATTTATCGATATTTTCGTAGTCTGGCAGTAGATAGTCCATTTACAACTGCCAGAGAAAACTTGATAGTTGCATTTGAGAAGAATCGTCAAAGTTTTTCTCAGCTTTCTGGTGATGTTAAAGCTCTTGCAGTCAAGGAATCTTCTGTGCGATCAACTGGCAAAGGAAGAGGAAAAGGGGAAGCAAAACTTGCAACAAGGGGTACTGGTGTTGATGCCAGTCCTAGAACAGGAGCATCCAGTATACAGGAAACATATAAATACTTCTGCACGCGCTTTGTCCGTCTAAATGGAATCTTGTTTACACGCACAAGCATTGAGACTTTTGCTGAAGTTCTTGCTGTTGTAAGCACTGGCCTGCGTGAGCTTCTGTCTTCCGGTCAAGATGAAGAGCTGAATTTTGGGACAGACACTCCTGAGAATGCACTTGTCATCGTCAGAATTGTCTGCATTCTAGTATTCACAGTTTATAATGTGAACAAGGAATCTGAAGGTCAAACTTATTCAGAAATTGTACAGCGTGCTGTTCTGCTTCAGAATGCATTTACAGCAGCTTTTGAATTGATGGGTTACCTAATAGAGAGATGTGCACAGCTGCGTGATCCTTCTTCTAGTTATCTTTTGCCAGGCATTTTGGTTTTTGTTGAGTGGTTGGCTTTTTATCCAGATCTTGCTGCAGGCAATGATGTGGATGAAAATCAGGCAAATTTGAGATCAGAATTTTGGAATCGTTGTGTATCCTTCTTGAATAAGCTGCTTTCAGTTGGGCCTATGTCTATTGATGATGACGAAGAGGAGACTTGCTTTAATAACATGAGCAGGTATGAGGAAGGGGAAACTGAAAACCGACATGCTTTGTGGGAGGACTCCGAGTTAAGGGGATTTATTCCACTTCTTCCTGCACAAACCATCCTGGATTTTTCAAGGAAGCATTCCATTGTAAGTGATGGTGATAAGGAAAGAAAAGCTCGGATCAAAAGGATTTTAGCTGCTGGGAAGGCTTTAGCAAATGTTGTTAAGGTTGATAAACAAATGATCTATTTTGATTCAAAGGTGAAGAAATTTGTAATTGGTGTTGAGCCTCAAACTGCAGATGATTTTGGTTTTTCCACCTATTCAGGCATGTCGAATGCAAAAGAGTTAGTGCAAGAAAATCCTGCACAGAAATCGAAGATGGAAATTGTTCAGTCAAACCAACACCAGCATATGGAAGGAGATGATGACGATGAGGTTATTGTTTTCAAACCTGTAGTGGCTGAGACACGAGCTGATGTGATTGCCTCATCATGGGCACCCCATGTGGGTTTGGAACCTTTTCCAAAAGCATCTGGAGGGGATTTAATATTTCATGTTAATTCTACTTCTAATCCTCTAAGTAACCTAAGTCATCAAACTTTATCTGTTCCTGGTGGTGGTATGGTGCCTCAACACCTGCAACCAGTTCAGCCACATACATCAAGGTGGTTAGAGGAGGAAATTTCTCTTGCTAACAATTTAAAAGGTCTTGGGTTATTTGAGAATGGACATGTGATGAAACCTGGTCTACAAGAAGCGGTTGGCTTCTCCAACCATGTTTCACTTCCTTTTCCTATCCAACAATCTATAGGTGCTGATACTAATGGCATGTTTTATGGTTTCTCAAAAGCTTTGGAGTCTGCAGTACCATCCAAAGTTGATACCATTGCATCTTCTGGAGTAGTTACTGATAATTTAGCTGTAAAAACGTCAGCTTTGCCAGTTGGTTCAAGAAAAGCCCCAGTCAGTCGACCTACTAGGCACCTTGGACCTCCTCCTGGTTTCAGTCATGTTCCTCCCAAACAAGGTATTGAATCCACCGTTTCAGATTCAATTAGTGGGAACCCAATTATGGATGATTATAGTTGGTTGGATGGCTATCATTTGCATTCATCAACAAAAGGATTAGGCTCCAATGGTCCTCTTAACTACTCTCAGTCAAATTCTCAGCAAGTCAGTAACAACGGCTTGAGTCCTACTGCCAGCTTTCCCTTTCCTGGAAAACAAGTTCCTCCTGTGCCTCTTCAAGTGGAGAAACAGAATGGTTGGCAAGATTATCAAACTTATGATCTTTTAAAATCACATCATGGTCAGCAGCTTCAGCCACAACAGCTCACAACTGGAAACCAGCAGTTTTCTCCTCTGCCCGAGCAATTTCAAGGACAGTCAATGTGGACAGGTCGTTACTTTGTGTGA

Predicted protein sequences of Glyma20g08040

Limit To All Plant Sequences

>Glyma20g08040.1   sequence type=predicted peptide   gene model=Glyma20g08040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIVEMDKMSAPSSRERAQRLYDKNLELESKRRRSAKARVPSDPNAWQQIRENYEAIILEDHAFSEQHNIEYALWQLHYKRIEEFRAYFSAALSSTNANSSQGGKGPARPDRITKIRLQFKTFLSEATGFYHDLITKIRAKYGLPLGYFEDSEKDGKKSAEMKKGLVACHRCLIYLGDLARYKGMYGEGDSINREFTAASSYYLQAASLWPSSGNPHHQLALLASYSGDELVAIYRYFRSLAVDSPFTTARENLIVAFEKNRQSFSQLSGDVKALAVKESSVRSTGKGRGKGEAKLATRGTGVDASPRTGASSIQETYKYFCTRFVRLNGILFTRTSIETFAEVLAVVSTGLRELLSSGQDEELNFGTDTPENALVIVRIVCILVFTVYNVNKESEGQTYSEIVQRAVLLQNAFTAAFELMGYLIERCAQLRDPSSSYLLPGILVFVEWLAFYPDLAAGNDVDENQANLRSEFWNRCVSFLNKLLSVGPMSIDDDEEETCFNNMSRYEEGETENRHALWEDSELRGFIPLLPAQTILDFSRKHSIVSDGDKERKARIKRILAAGKALANVVKVDKQMIYFDSKVKKFVIGVEPQTADDFGFSTYSGMSNAKELVQENPAQKSKMEIVQSNQHQHMEGDDDDEVIVFKPVVAETRADVIASSWAPHVGLEPFPKASGGDLIFHVNSTSNPLSNLSHQTLSVPGGGMVPQHLQPVQPHTSRWLEEEISLANNLKGLGLFENGHVMKPGLQEAVGFSNHVSLPFPIQQSIGADTNGMFYGFSKALESAVPSKVDTIASSGVVTDNLAVKTSALPVGSRKAPVSRPTRHLGPPPGFSHVPPKQGIESTVSDSISGNPIMDDYSWLDGYHLHSSTKGLGSNGPLNYSQSNSQQVSNNGLSPTASFPFPGKQVPPVPLQVEKQNGWQDYQTYDLLKSHHGQQLQPQQLTTGNQQFSPLPEQFQGQSMWTGRYFV*

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