Glyma20g08020 - SoyBase

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Report for Sequence Feature Glyma20g08020

Feature Type:	gene_model
Chromosome:	Gm20
Start:	11148778
stop:	11154248
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g08020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13500	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr5:4338676-4340827 FORW	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
UniRef100_E9KID2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Root determined nodulation 1 n=2 Tax=Medicago truncatula RepID=E9KID2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NDW3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NDW3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g08020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g08020

Paralog	Evidence	Comments
Glyma07g35891	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g08020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g040500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g08020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g08020

Limit To All Plant Sequences

>Glyma20g08020.3   sequence type=transcript   gene model=Glyma20g08020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTGATTCTGATGCAGACAAAATGGAATGTTTATGACCAAGATTTGAGTCCAGTCAGTTCCAATCAAAAACCTATGATCTTTTTTTTCTTACTTTTGGGGTGTCATTACCTTTCATGCTCCACATTCAACAGTGACCACCCACTTAATGTACCATCTTCTTCATTCACTGCCAACTCCACTTTCTCTCAGTGCATGCATGTAATATAGTATTCAGTTTTTGGAGTCCACAAAGCTAGATATAGCCACCTCTTCAAAGTTCAAAACTTCCCTTTTTGGTTCTAGTTTGCATCTTATTCATTTTCCCTGCATTTCTATGCTTCAAACTATTCTTCTTTTTTTGTCTAAATTTTCCTTCTGTCTTTTTTTCTGACTCAAAGTTTGAACTTTTCCTATGGGGGTACCTTGAATTGTGTAGAACATCAGTTTTTTATGTGAAATTTTATTCTAGTTCAAGTATGGGCTGGTGTTCTTATTTTTACATGGATTTCAGTTTCTAGGATTTTTTTCTGCACAAATCACTAATGGCAACATTTGAAGCAAGGAGTGATCTCAATTGAGTACATTTTTATGAACAGAACCTATGATTGTGGTTAGCTTTAGTAGGGCTGAATGGGGTTTATTTAACAGCTGTTATAGGTAGAATTTAGTTGGTTTGAGTTTTGGAGATTTAGAGAATCCATATTAGAATAACAAAATAAGTAAAGAATATGATTGTGAGGAAAAACAAGCCAAGTGCAAGGTCACTACTTATGCTTTTTGTTATGGTTCTTGCTTTTCTCTTTGTCACTTATAATTTGGTGTTTATAATCAAACACCATATGGGTGGAACTTGGGTAGCAGAAGAGTTGAGGTTTCTTGATCCTGTGATCAGCATGCCTGGAAAGGTGATGGCATTAGCAAATTCCAATTCAAAATTTCATGTTGCAGTGACCGCAACCGATGCGGCTTACAGCCAATGGCAATGCCGGATTATGTACTATTGGTATAAGAAGGTTAAAGATATGCCTGGATCAGACATGGGAAAGTTCACCAGAATAGTGCACTCAGGAAGGCAAGATCAGTTGATGGATGAGATTCCTACTTTTGTGGTTGATCCACTTCCTGAAGGCTTGGATAGGGGTTATGTTGTCATGAATAGACCATGGGCTTTTGTTCAGTGGCTGGAGAAAGCAGACATTGAGGAAGAATATATTTTGATGGCAGAACCTGACCACATATTTGTAAATCCTTTGCCAAATTTGACTAATGGAAACCAACCAGCAGGGTATCCATTTTTCTATATAAAACCAGTTAAACATGAAAAAATACTTAGGAAATTCTACCCTAAGGCGAATGGTCCTATTACTGCTATTGATCCCATTGGCAATTCTCCTGTAATCATTCAGAAGTCCTTGCTAGAGGAAATAGCTCCCACATGGGTGAATATTTCCTTGCAAATGAAAGATGATCCGGCAACTGACGAAACTTTTGGATGGGTACTTGAAATGTATGCGTACGCTGTGGCATCAGCTTTGCACGGTGTACGGCATATTCTTCATGATAACTTCATGCTCCAGCCACCTTGGGACTTTGATGTTGAGAACAATTTTATAATCCATTATACTTATGCATGTGACTACAATTTAAAGGGTCTTGCATGTCTATCTTTGCTTGTTGCATAAGTCAACTACTCCTACTACTTATATATTCAGGGGGAACTAACATATGGGAAGATTGGAGAATGGCGTTTTAACAAGAGATTTTATCTATCAGGTCCTCCACCCAAAAACCTTTCCTTACCCCCTCCTGGAGTTCCTGAAAGTGTGGTGCAGCTTGTAAAGATGATCAATGAGGCTACTGCTAACATACCTAAATGGGATTCTTTAAATAGAAGCTAAGGAAAAGAAAATAAAGTGCAAGGTCTAAGGCCCCTCATGCTAGTGGCTACTAGATGAGAAACAACAATTCTGATTACATGAAAATAGACCAGTTTAACCCAGAGAAGAACTATGATGAACACAGAAATATGTTTTTGTGCTAGCTCTGAAAATAGTTTTTTTTTTAGCAAGTAAATTGTTGGTATTGAAACATATAAAAACAATGACAGTTGATCAGACAACATTTTCCAAAAGATTTTTGTCAGAGGGAAATCAATGGAAACATCTTGTCAGATTGTTATGTCTACAGTTCAACGTATCAAATATCCAGTGAAAAGGGAAAATGAAAGTAACCACCCAAAGTTTTGAATTGATTGATAGTATATTTGTGCATTATACAAATCATTTCAAAGTGGTAGTTATTTCCTTTGAGCATGTTTTAAGAAAATTTAATAAATCAGTTGTTGATTAAAATTTAATGGAGG

Coding sequences of Glyma20g08020

Limit To All Plant Sequences

>Glyma20g08020.2   sequence type=CDS   gene model=Glyma20g08020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGTGAGGAAAAACAAGCCAAGTGCAAGGTCACTACTTATGCTTTTTGTTATGGTTCTTGCTTTTCTCTTTGTCACTTATAATTTGGTGTTTATAATCAAACACCATATGGGTGGAACTTGGGTAGCAGAAGAGTTGAGGTTTCTTGATCCTGTGATCAGCATGCCTGGAAAGGTGATGGCATTAGCAAATTCCAATTCAAAATTTCATGTTGCAGTGACCGCAACCGATGCGGCTTACAGCCAATGGCAATGCCGGATTATGTACTATTGGTATAAGAAGGTTAAAGATATGCCTGGATCAGACATGGGAAAGTTCACCAGAATAGTGCACTCAGGAAGGCAAGATCAGTTGATGGATGAGATTCCTACTTTTGTGGTTGATCCACTTCCTGAAGGCTTGGATAGGGGTTATGTTGTCATGAATAGACCATGGGCTTTTGTTCAGTGGCTGGAGAAAGCAGACATTGAGGAAGAATATATTTTGATGGCAGAACCTGACCACATATTTGTAAATCCTTTGCCAAATTTGACTAATGGAAACCAACCAGCAGGGTATCCATTTTTCTATATAAAACCAGTTAAACATGAAAAAATACTTAGGAAATTCTACCCTAAGGCGAATGGTCCTATTACTGCTATTGATCCCATTGGCAATTCTCCTGTAATCATTCAGAAGTCCTTGCTAGAGGAAATAGCTCCCACATGGGTGAATATTTCCTTGCAAATGAAAGATGATCCGGCAACTGACGAAACTTTTGGATGGGTACTTGAAATGTATGCGTACGCTGTGGCATCAGCTTTGCACGGTGTACGGCATATTCTTCATGATAACTTCATGCTCCAGCCACCTTGGGACTTTGATGTTGAGAACAATTTTATAATCCATTATACTTATGCATGTGACTACAATTTAAAGGGGGAACTAACATATGGGAAGATTGGAGAATGGCGTTTTAACAAGAGATTTTATCTATCAGGTCCTCCACCCAAAAACCTTTCCTTACCCCCTCCTGGAGTTCCTGAAAGTGTGGTGCAGCTTGTAAAGATGATCAATGAGGCTACTGCTAACATACCTAAATGGGATTCTTTAAATAGAAGCTAA

>Glyma20g08020.3   sequence type=CDS   gene model=Glyma20g08020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGTGAGGAAAAACAAGCCAAGTGCAAGGTCACTACTTATGCTTTTTGTTATGGTTCTTGCTTTTCTCTTTGTCACTTATAATTTGGTGTTTATAATCAAACACCATATGGGTGGAACTTGGGTAGCAGAAGAGTTGAGGTTTCTTGATCCTGTGATCAGCATGCCTGGAAAGGTGATGGCATTAGCAAATTCCAATTCAAAATTTCATGTTGCAGTGACCGCAACCGATGCGGCTTACAGCCAATGGCAATGCCGGATTATGTACTATTGGTATAAGAAGGTTAAAGATATGCCTGGATCAGACATGGGAAAGTTCACCAGAATAGTGCACTCAGGAAGGCAAGATCAGTTGATGGATGAGATTCCTACTTTTGTGGTTGATCCACTTCCTGAAGGCTTGGATAGGGGTTATGTTGTCATGAATAGACCATGGGCTTTTGTTCAGTGGCTGGAGAAAGCAGACATTGAGGAAGAATATATTTTGATGGCAGAACCTGACCACATATTTGTAAATCCTTTGCCAAATTTGACTAATGGAAACCAACCAGCAGGGTATCCATTTTTCTATATAAAACCAGTTAAACATGAAAAAATACTTAGGAAATTCTACCCTAAGGCGAATGGTCCTATTACTGCTATTGATCCCATTGGCAATTCTCCTGTAATCATTCAGAAGTCCTTGCTAGAGGAAATAGCTCCCACATGGGTGAATATTTCCTTGCAAATGAAAGATGATCCGGCAACTGACGAAACTTTTGGATGGGTACTTGAAATGTATGCGTACGCTGTGGCATCAGCTTTGCACGGTGTACGGCATATTCTTCATGATAACTTCATGCTCCAGCCACCTTGGGACTTTGATGTTGAGAACAATTTTATAATCCATTATACTTATGCATGTGACTACAATTTAAAGGGTCTTGCATGTCTATCTTTGCTTGTTGCATAA

Predicted protein sequences of Glyma20g08020

Limit To All Plant Sequences

>Glyma20g08020.2   sequence type=predicted peptide   gene model=Glyma20g08020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIVRKNKPSARSLLMLFVMVLAFLFVTYNLVFIIKHHMGGTWVAEELRFLDPVISMPGKVMALANSNSKFHVAVTATDAAYSQWQCRIMYYWYKKVKDMPGSDMGKFTRIVHSGRQDQLMDEIPTFVVDPLPEGLDRGYVVMNRPWAFVQWLEKADIEEEYILMAEPDHIFVNPLPNLTNGNQPAGYPFFYIKPVKHEKILRKFYPKANGPITAIDPIGNSPVIIQKSLLEEIAPTWVNISLQMKDDPATDETFGWVLEMYAYAVASALHGVRHILHDNFMLQPPWDFDVENNFIIHYTYACDYNLKGELTYGKIGEWRFNKRFYLSGPPPKNLSLPPPGVPESVVQLVKMINEATANIPKWDSLNRS*

>Glyma20g08020.3   sequence type=predicted peptide   gene model=Glyma20g08020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIVRKNKPSARSLLMLFVMVLAFLFVTYNLVFIIKHHMGGTWVAEELRFLDPVISMPGKVMALANSNSKFHVAVTATDAAYSQWQCRIMYYWYKKVKDMPGSDMGKFTRIVHSGRQDQLMDEIPTFVVDPLPEGLDRGYVVMNRPWAFVQWLEKADIEEEYILMAEPDHIFVNPLPNLTNGNQPAGYPFFYIKPVKHEKILRKFYPKANGPITAIDPIGNSPVIIQKSLLEEIAPTWVNISLQMKDDPATDETFGWVLEMYAYAVASALHGVRHILHDNFMLQPPWDFDVENNFIIHYTYACDYNLKGLACLSLLVA*

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