SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19410 | AT | Annotation by Michelle Graham. TAIR10: ABC-2 type transporter family protein | chr5:6545237-6547111 REVERSE LENGTH=624 | SoyBase | E_val: 0 | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| GO:0042626 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances | SoyBase | N/A | ISS |
| KOG0061 | KOG | Transporter, ABC superfamily (Breast cancer resistance protein) | JGI | ISS | |
| PTHR19241 | Panther | ATP-BINDING CASSETTE TRANSPORTER | JGI | ISS | |
| PTHR19241:SF105 | Panther | JGI | ISS | ||
| PF00005 | PFAM | ABC transporter | JGI | ISS | |
| PF01061 | PFAM | ABC-2 type transporter | JGI | ISS | |
| UniRef100_G7JHT4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter G family member n=1 Tax=Medicago truncatula RepID=G7JHT4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DD88 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DD88 related cluster n=1 Tax=unknown RepID=UPI000233DD88 | SoyBase | E_val: 0 | ISS |
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Glyma20g08010 not represented in the dataset |
Glyma20g08010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g35860 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g040400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g08010.2 sequence type=CDS gene model=Glyma20g08010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCATGCTTGAATCCACCTAGGCTATCTAGCACCGAAGATGACTCTGTGATACTCTATTCAACTTCTAATTCTCCTGAAGAGTCCAACAGTCCTTCTTCTTCCTCTTTCTACCATTCACCACCACCATCACTATATCAATTCAGAACTGAAAACAAACTTTCTGTGAGAAATCTCTGCTACACTTTGCACCCTCATAAGACCACTCCCTTTTCATTTTGTCACCTGACTCAAAAACCAAAGCCAGTAAACATACTCAAGTCAGTCTCTTTTATTGCCAGAAGTTCTGAGATTGTTGCTGTTGTTGGTCCTAGTGGCACAGGAAAGTCCACCCTTCTGCGAATCATCGCCGGAAGGGTAAAAGATGAAGGTTTTAATCCTAAAAGTGTCTCAATCAATGATCAGCCTATGACTACTCCAGTTCAGTTGAGGAAGATATGTGGCTTTGTGGCACAAGAGGACAATTTGCTTCCCATGCTAACTGTGAAAGAAACTTTGTTGTTTAGTGCCAAGTTTAGGCTAAAAGAAATGACACCAAAGGATAGGGAATTGAGAGTAGAAAGCTTGTTGCAAGAGCTTGGCCTTTTTCATGTTGCTGATAGTTTTGTTGGAGATGAAGAGAATAGAGGGATATCAGGTGGGGAGAGGAAAAGGGTGTCAATTGGAGTTGACATGATTCACAATCCACCAATTTTGCTTCTAGATGAACCAACATCAGGTCTAGACAGCACTTCAGCTTTGCAAGTCATAGAGCTTCTCTCATCAATTGTTAAAGCAAAGCAAAGGACAGTGGTTCTTTCAATACACCAACCCAGCTATAGAATATTGCAGTATATTTCCAAGTTCTTGATCCTTTCTCATGGTTCAGTTGTTCACAATGGTAGCCTAGAACAGCTAGAGGAAACCATAAGTAAATTGGGATTTCAAATTCCAACACAACTGAATGCTTTAGAATTCTCCATGGAAATTATACGCGGGTTGGAAGATTCCAGTTCCAAATATGACACTTGCAGCATTGAGGAAATGGAGCCAATTCCAAACCTCATGTGGCCAGAGGAAGAAAACTGTGAAGTCCAAATTGTCCAATCGCAATGTAACAAGGGAAGTTTTGGCAGTCTTTTCTATGCAAACTTGATTGAGATATTGTTTCTCTGCTCAAGATTTTGGAAAATCATTTATAGAACAAAGCAGCTTTTCTTGGCCAGAACAATGCAAGCAATAGTTGGTGGCTTTGGGCTAGGAAGTGTTTACATAAAGATAAGAAGGGATGAAGGAGGAGTTGCTGAAAGATTAGGTCTATTTGCATTTAGTCTTAGTTTTCTCCTCTCTTCTACAGTTGAAGCACTTCCAATATACCTTCAAGAGAGGAGTGTTCTGATGAAAGAAGCCTCAAGGGGAGCCTATAGGATTTCCTCTTACATGATAGCCAACACTTTTGTCTTTCTTCCATTCTTGTTTGTAGTGTCTATACTTTTTGCTGTTCCTGTGTATTGGCTTGTAGGACTAAACCCTTCCCTTTCTGCCTTCACCTTCTTCACTTTTGTGGTGTGGCTCATTGTGCTCATGGCAAGTTCTTTGGTACTCTTCTTGAGTGCTGTCTCTCCTGATTTCATTTCAGGGAACTCTCTCATCTGCACAGTTCTTGGAGCCTTCTTCCTCTTCTCTGGATACTTCATCCCAAAGGAGAGCATTCCAAAGTATTGGATTTTCATGTACTATGTGTCTCTCTATAGGTACCCTTTGGATGCGCTCCTCACAAATGAGTATTGGAATGTTAGAAGTGAGTGTTTCTCACATCAAATAGAGGGATCACAGTGCTTGATCACTGGGTTTGATGTGTTGAAGAGTAGAGGACTTGAAAGGGATAACAGGTGGATGAATGTGGGAATAATGTTGGGATTCTTTGTGTTGTATCGTGTTCTTTGTTGGATAATACTTGCACGAAAGGCCTCCAAGACAACACTATAA
>Glyma20g08010.2 sequence type=predicted peptide gene model=Glyma20g08010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAACLNPPRLSSTEDDSVILYSTSNSPEESNSPSSSSFYHSPPPSLYQFRTENKLSVRNLCYTLHPHKTTPFSFCHLTQKPKPVNILKSVSFIARSSEIVAVVGPSGTGKSTLLRIIAGRVKDEGFNPKSVSINDQPMTTPVQLRKICGFVAQEDNLLPMLTVKETLLFSAKFRLKEMTPKDRELRVESLLQELGLFHVADSFVGDEENRGISGGERKRVSIGVDMIHNPPILLLDEPTSGLDSTSALQVIELLSSIVKAKQRTVVLSIHQPSYRILQYISKFLILSHGSVVHNGSLEQLEETISKLGFQIPTQLNALEFSMEIIRGLEDSSSKYDTCSIEEMEPIPNLMWPEEENCEVQIVQSQCNKGSFGSLFYANLIEILFLCSRFWKIIYRTKQLFLARTMQAIVGGFGLGSVYIKIRRDEGGVAERLGLFAFSLSFLLSSTVEALPIYLQERSVLMKEASRGAYRISSYMIANTFVFLPFLFVVSILFAVPVYWLVGLNPSLSAFTFFTFVVWLIVLMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWIFMYYVSLYRYPLDALLTNEYWNVRSECFSHQIEGSQCLITGFDVLKSRGLERDNRWMNVGIMLGFFVLYRVLCWIILARKASKTTL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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