|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G22120 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7334612-7336755 REVERSE LENGTH=383 | SoyBase | E_val: 2.00E-23 | ISS |
GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
PTHR21678 | Panther | GROWTH INHIBITION AND DIFFERENTIATION RELATED PROTEIN 88 | JGI | ISS | |
UniRef100_B0L3S2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mago nashi interaction protein (Fragment) n=1 Tax=Taiwania cryptomerioides RepID=B0L3S2_9CONI | SoyBase | E_val: 4.00E-12 | ISS |
UniRef100_I1LKM0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LKM0_SOYBN | SoyBase | E_val: 1.00E-27 | ISS |
Glyma20g07862 not represented in the dataset |
Glyma20g07862 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.20g039700 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g07862.1 sequence type=CDS gene model=Glyma20g07862 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATATCAATGTGAAAGGGGAGTGGATCCTAATGCACATAATGTCATGTCCAAATTTTTTGTCTCTCTCTTCGTACTATTCTATCACATCATCAAACTATGGGACCAGTCATGTTCTTGTTCTGGCTGACTTTTCACCAAGTACTAGGACAACAAAGCTAGAGAAGCTTTTTGAGAACTTCAAGGATTGTGGATTTGTGATTCGTTGGGTCAATGATACAATTGCTCTTGCAGTATTCCGAACACCTCCAGTTGGTAATTATAAAGTTACCTGA
>Glyma20g07862.1 sequence type=predicted peptide gene model=Glyma20g07862 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNINVKGEWILMHIMSCPNFLSLSSYYSITSSNYGTSHVLVLADFSPSTRTTKLEKLFENFKDCGFVIRWVNDTIALAVFRTPPVGNYKVT*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||