Glyma20g07443 - SoyBase

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Report for Sequence Feature Glyma20g07443

Feature Type:	gene_model
Chromosome:	Gm20
Start:	10161021
stop:	10168953
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g07443

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01790	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L13 family protein \| chr3:283880-285583 REVERSE LENGTH=205	SoyBase	E_val: 4.00E-109	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0015934	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG3203	KOG	Mitochondrial/chloroplast ribosomal protein L13	JGI		ISS
PTHR11545	Panther	RIBOSOMAL PROTEIN L13	JGI		ISS
PF00572	PFAM	Ribosomal protein L13	JGI		ISS
UniRef100_G7JH46	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L13 n=1 Tax=Medicago truncatula RepID=G7JH46_MEDTR	SoyBase	E_val: 9.00E-118	ISS
UniRef100_UPI000233DD2E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DD2E related cluster n=1 Tax=unknown RepID=UPI000233DD2E	SoyBase	E_val: 4.00E-146	ISS

Expression Patterns of Glyma20g07443

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g07443 not represented in the dataset	Glyma20g07443 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g07443 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g058200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g07443

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g07443

Limit To All Plant Sequences

>Glyma20g07443.1   sequence type=CDS   gene model=Glyma20g07443   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATGGTAACTGCTTTCAATGGCAACATGAAGAAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGATGCAAAGGGCCAGGTTTTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATAAGCCAACTTACACACCTAATCGTGATGATGGAGATATGTGCATTGTTCTTAATGCAAAAGATATTTGTGTGACTGGGAGAAAACTTACAGACAAGGTCTACTACTGGCATACAGGGTATATTGGCCATCTCAAGCAAAGGACTCTAAAGGATCAAATGGCCAAAGACCCTACTGAAGTCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGATGACAGGGACCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTTGATCGCCCACTTGAACCTTATGTGATGCCTCCTAGAAGTGGACGGGAAATGAGGCCGCGAGCAAGGCGTGCCATGATTCGAGCACAGAAGAAGGCAGAGCAGCAACAACAGAAGGCTAATGGAATGAAGAAGGGCAAAAATGGAGAAGCACGGGAAGAAAGTGCATGA

Predicted protein sequences of Glyma20g07443

Limit To All Plant Sequences

>Glyma20g07443.1   sequence type=predicted peptide   gene model=Glyma20g07443   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMVTAFNGNMKKAAAGLRRINLDGLRWRVFDAKGQVFGRLASQIATVVQGKDKPTYTPNRDDGDMCIVLNAKDICVTGRKLTDKVYYWHTGYIGHLKQRTLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFVDRPLEPYVMPPRSGREMRPRARRAMIRAQKKAEQQQQKANGMKKGKNGEAREESA*

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