Report for Sequence Feature Glyma20g07280
Feature Type: gene_model
Chromosome: Gm20
Start: 9965974
stop: 9977698
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g07280
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G04350 AT
Annotation by Michelle Graham. TAIR10: AMP-dependent synthetase and ligase family protein | chr2:1516086-1519178 FORWARD LENGTH=720
SoyBase E_val: 0 ISS
GO:0001676 GO-bp
Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process
SoyBase N/A ISS
GO:0006631 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process
SoyBase N/A ISS
GO:0006633 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004467 GO-mf
Annotation by Michelle Graham. GO Molecular Function: long-chain fatty acid-CoA ligase activity
SoyBase N/A ISS
KOG1180
KOG
Acyl-CoA synthetase
JGI ISS
PTHR24096 Panther
FAMILY NOT NAMED
JGI ISS
PF00501 PFAM
AMP-binding enzyme
JGI ISS
UniRef100_G7JI82 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Annotation was added to scaffolds in November 2011 Long-chain-fatty-acid-CoA ligase n=1 Tax=Medicago truncatula RepID=G7JI82_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1NDV3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NDV3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma20g07280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma20g07280 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g060100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g07280
Transcripts of Glyma20g07280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g07280.3 sequence type=transcript gene model=Glyma20g07280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CTTTATCATAGGATAACTTGAAGTCATAAATACGAAGCCACCTTATTTTGAGGGATAAAATAAAATAAACTGATAAACGTAGAAGCGTACACTTGTACTTGTTTGCTTTTTACGAAACTAAAATTATTAATTTTATACTTTATCGTAACTTGGTCACGCTACAGTTGTCGTGCGGCTTCGTACAGCGTATATTTTGATGCGAACAATAGTATGCAATACTGGTCGGTGCTGTGCTGTGCTGTGCTGTGTTGCTGACCACTGCTTACCCTAAAATAAATGACTTTACTAAAATAGAGACACACAAACACACAAACACAATTACACAAACACACGGTCATTGGCATTTTATCGTACCCACATAGGTAATCTAGGTTGTGTTTTGCTTAAGAAGGACCACTATATCTCACCAAACATAAAAGATGGATGATCCAAAGGGTAGTTCCTCATGGTTAAAAATTCTAAATATAAGTGACATATTTGGCTGGAAAGATCATGGAGAGTATGGAGCTCTTGCAGCTATAGTCATAAGCATTCTTGTTCCTGTCTTGTTTTCAGCTTTGTTCTTTGGAAAAAAAAAAGGAAAAATAAGAGGTGTGCCGGTAGAAGTTGGTGGTGAGGAATGTTTTGCAGTACGTAATGCTAGAAAAACTGAGTTGGTTGAAGTTCCTTGGAAAGGAGCCCCAACCATGGCTCATCTATTTGAGCAATCCTGTAATAAATATACCTGCAATCGATTTCTTGGAACTAGAAAACTAATACAAAAGGAGTTGGTTACATCTAGTGATGGCAGGAAGTTTGAGAAACTTCATTTAGGAGACTATGAATGGGAAACCTATGGAGAGGTATTTGCTCGCGTGTCCAATTTTGCATCTGGTCTTCTTAAATTGGGCCATAATGAAGATAGCCGTGTTGCCATTTTCTCTGATACCCGGGCTGAGTGGCTCATTGCCCTTCAGGGCTGCTTCAGGCAGAATGTAACAGTCGTTACTATTTATGCTTCTCTAGGTGAGGATGCCCTGATCCACTCACTAAATGAGACTGAAGTATCTACTCTGATCTGTGACTCCAAGCAGTTGAAGAAGTTGGATGCAATAAGATCAAGACTAATATCTTTACAAAATATTATTTACTTTGAAGATGATAACGAAGAAGATGCTTTCTCTGGAAGTTCAAGCGGCTGGACAATTGCATCTTTTAGTGAAGTTGAGAAACTTGGGAAAGAAAGTCCTGTTGAGCCAAGCCTGCCTTCCAAGAATGCTATTGCAGTTATCATGTACACAAGTGGCAGTACAGGTCTGCCAAAGGGTGTCATGATTACTCACGGCAACATTGTAGCCACTACAGCAGCTGTTATGACAGTGATTCCAAATCTAGGTAGCAAGGATGTGTACCTGGCATACTTGCCCCTTGCTCATGTTTTTGAAATGGCAGCAGAGTCTGTTATGCTGGCTGCAGGTTGTGCAATTGGTTACGGCTCTCCTCTGACTTTAACTGACACGTCTAATAAAGTCAAGAAAGGAACCAAGGGAGATGCTACTGTGTTAAAGCCCACTCTTTTGACAGCAGTACCAGCTATTCTTGATCGGATTCGAGATGGAGTTGTAAAAAAGGTTGAGCAAAAAGGGGGCCTTGTGAAGAATCTTTTCCATTTTGCATACAAGCGCCGACTGGCTGCTGTAAAAGGAAGCTGGCTAGGAGCTTGGGGATTGGAAAAGTTGATGTGGGATACCATTGTCTTTAAACAAATTCGTAGTGCACTTGGAGGCCAGCTCCGGTTTATGCTTTGTGGGGGAGCTCCTTTATCTGGAGATTCGCAACACTTCATCAATATCTGCATGGGGGCTCCTATTGGGCAAGGATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCAGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCTACATTAAGCTTGTTTCTTGGGAAGAAGGAGGGTATCTGACATCAGATAAACCAATGCCAAGGGGAGAGATTGTAGTTGGAGGATTTAGTGTGACAGCTGGTTACTTTAAGAATCAAGAAAAAACTAACGAAGTGTTCAAGGTTGATGAGAAAGGTATGCGCTGGTTTTATACTGGTGATATTGGGCAATTCCACCCTGATGGATGTCTTGAAATCATAGATAGGAAGAAAGATATTGTCAAACTTCAACATGGAGAATATATCTCTCTCGGAAAGGTTGAGGCAGCACTATCATCATGTGATTATGTGGACAATATAATGGTTTATGCAGACCCCTTTCACAATTACTGTGTGGCTCTAGTTGTTGCTTCACAACAGTCCCTGGAGAAGTGGGCCCAACAAGCTGGTATAGATTACCAAGATTTTCCTGATCTGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAGGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAGTTGCTGCCGGATCCATGGACTCCTGAATCTGGATTGGTCACTGCAGCTCTCAAGATAAAGAGAGAGCAGCTGAAAGCCAAATTCAAAGACGATCTTCAGAAGTTGTATGCATGAAATGTAGTATCTAACCTCTTCAATTTCTGGTTGGTGTATGCTCAATGTATGTAATGTGTCACAGGTATCTTTTTTATTCGATAATACTATTGAACATGTAACTAATTTGACATAATAAAATCATACTCCAAATAATACATCAAGTGGGTCTAGTTCAGTTGGTTAAACAGGATGTGTGAGTGTTATAAACTCCCTCACACTGTATTCAATTCTTACAGATAAAAAAACCACTCCAAATAATACTTGGCTGTGAACATGAATTTTTGCAGTTAAGCCAACCAAGCAATGGCTAGCAATAGATATAGTTGATTTATGAGCAGTAATTTCTCTTGAAAAAATACTTCTACATGATGTTTTTAGTGTTTGTATGGTTACAAGATTTAA
Coding sequences of Glyma20g07280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g07280.2 sequence type=CDS gene model=Glyma20g07280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGATCCAAAGGGTAGTTCCTCATGGTTAAAAATTCTAAATATAAGTGACATATTTGGCTGGAAAGATCATGGAGAGTATGGAGCTCTTGCAGCTATAGTCATAAGCATTCTTGTTCCTGTCTTGTTTTCAGCTTTGTTCTTTGGAAAAAAAAAAGGAAAAATAAGAGGTGTGCCGGTAGAAGTTGGTGGTGAGGAATGTTTTGCAGTACGTAATGCTAGAAAAACTGAGTTGGTTGAAGTTCCTTGGAAAGGAGCCCCAACCATGGCTCATCTATTTGAGCAATCCTGTAATAAATATACCTGCAATCGATTTCTTGGAACTAGAAAACTAATACAAAAGGAGTTGGTTACATCTAGTGATGGCAGGAAGTTTGAGAAACTTCATTTAGGAGACTATGAATGGGAAACCTATGGAGAGGTATTTGCTCGCGTGTCCAATTTTGCATCTGGTCTTCTTAAATTGGGCCATAATGAAGATAGCCGTGTTGCCATTTTCTCTGATACCCGGGCTGAGTGGCTCATTGCCCTTCAGGGCTGCTTCAGGCAGAATGTAACAGTCGTTACTATTTATGCTTCTCTAGGTGAGGATGCCCTGATCCACTCACTAAATGAGACTGAAGTATCTACTCTGATCTGTGACTCCAAGCAGTTGAAGAAGTTGGATGCAATAAGATCAAGACTAATATCTTTACAAAATATTATTTACTTTGAAGATGATAACGAAGAAGATGCTTTCTCTGGAAGTTCAAGCGGCTGGACAATTGCATCTTTTAGTGAAGTTGAGAAACTTGGGAAAGAAAGTCCTGTTGAGCCAAGCCTGCCTTCCAAGAATGCTATTGCAGTTATCATGTACACAAGTGGCAGTACAGGTCTGCCAAAGGGTGTCATGATTACTCACGGCAACATTGTAGCCACTACAGCAGCTGTTATGACAGTGATTCCAAATCTAGGTAGCAAGGATGTGTACCTGGCATACTTGCCCCTTGCTCATGTTTTTGAAATGGCAGCAGAGTCTGTTATGCTGGCTGCAGGTTGTGCAATTGGTTACGGCTCTCCTCTGACTTTAACTGACACGTCTAATAAAGTCAAGAAAGGAACCAAGGGAGATGCTACTGTGTTAAAGCCCACTCTTTTGACAGCAGTACCAGCTATTCTTGATCGGATTCGAGATGGAGTTGTAAAAAAGGTTGAGCAAAAAGGGGGCCTTGTGAAGAATCTTTTCCATTTTGCATACAAGCGCCGACTGGCTGCTGTAAAAGGAAGCTGGCTAGGAGCTTGGGGATTGGAAAAGTTGATGTGGGATACCATTGTCTTTAAACAAATTCGTAGTGCACTTGGAGGCCAGCTCCGGTTTATGCTTTGTGGGGGAGCTCCTTTATCTGGAGATTCGCAACACTTCATCAATATCTGCATGGGGGCTCCTATTGGGCAAGGATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCAGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCTACATTAAGCTTGTTTCTTGGGAAGAAGGAGGGTATCTGACATCAGATAAACCAATGCCAAGGGGAGAGATTGTAGTTGGAGGATTTAGTGTGACAGCTGGTTACTTTAAGAATCAAGAAAAAACTAACGAAGTGTTCAAGGTTGATGAGAAAGGTATGCGCTGGTTTTATACTGGTGATATTGGGCAATTCCACCCTGATGGATGTCTTGAAATCATAGATAGGAAGAAAGATATTGTCAAACTTCAACATGGAGAATATATCTCTCTCGGAAAGGTTGAGGCAGCACTATCATCATGTGATTATGTGGACAATATAATGGTTTATGCAGACCCCTTTCACAATTACTGTGTGGCTCTAGTTGTTGCTTCACAACAGTCCCTGGAGAAGTGGGCCCAACAAGCTGGTATAGATTACCAAGATTTTCCTGATCTGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAGGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAGTTGCTGCCGGATCCATGGACTCCTGAATCTGGATTGGTCACTGCAGCTCTCAAGATAAAGAGAGAGCAGCTGAAAGCCAAATTCAAAGACGATCTTCAGAAGTTGTATGCATGA
>Glyma20g07280.3 sequence type=CDS gene model=Glyma20g07280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGATCCAAAGGGTAGTTCCTCATGGTTAAAAATTCTAAATATAAGTGACATATTTGGCTGGAAAGATCATGGAGAGTATGGAGCTCTTGCAGCTATAGTCATAAGCATTCTTGTTCCTGTCTTGTTTTCAGCTTTGTTCTTTGGAAAAAAAAAAGGAAAAATAAGAGGTGTGCCGGTAGAAGTTGGTGGTGAGGAATGTTTTGCAGTACGTAATGCTAGAAAAACTGAGTTGGTTGAAGTTCCTTGGAAAGGAGCCCCAACCATGGCTCATCTATTTGAGCAATCCTGTAATAAATATACCTGCAATCGATTTCTTGGAACTAGAAAACTAATACAAAAGGAGTTGGTTACATCTAGTGATGGCAGGAAGTTTGAGAAACTTCATTTAGGAGACTATGAATGGGAAACCTATGGAGAGGTATTTGCTCGCGTGTCCAATTTTGCATCTGGTCTTCTTAAATTGGGCCATAATGAAGATAGCCGTGTTGCCATTTTCTCTGATACCCGGGCTGAGTGGCTCATTGCCCTTCAGGGCTGCTTCAGGCAGAATGTAACAGTCGTTACTATTTATGCTTCTCTAGGTGAGGATGCCCTGATCCACTCACTAAATGAGACTGAAGTATCTACTCTGATCTGTGACTCCAAGCAGTTGAAGAAGTTGGATGCAATAAGATCAAGACTAATATCTTTACAAAATATTATTTACTTTGAAGATGATAACGAAGAAGATGCTTTCTCTGGAAGTTCAAGCGGCTGGACAATTGCATCTTTTAGTGAAGTTGAGAAACTTGGGAAAGAAAGTCCTGTTGAGCCAAGCCTGCCTTCCAAGAATGCTATTGCAGTTATCATGTACACAAGTGGCAGTACAGGTCTGCCAAAGGGTGTCATGATTACTCACGGCAACATTGTAGCCACTACAGCAGCTGTTATGACAGTGATTCCAAATCTAGGTAGCAAGGATGTGTACCTGGCATACTTGCCCCTTGCTCATGTTTTTGAAATGGCAGCAGAGTCTGTTATGCTGGCTGCAGGTTGTGCAATTGGTTACGGCTCTCCTCTGACTTTAACTGACACGTCTAATAAAGTCAAGAAAGGAACCAAGGGAGATGCTACTGTGTTAAAGCCCACTCTTTTGACAGCAGTACCAGCTATTCTTGATCGGATTCGAGATGGAGTTGTAAAAAAGGTTGAGCAAAAAGGGGGCCTTGTGAAGAATCTTTTCCATTTTGCATACAAGCGCCGACTGGCTGCTGTAAAAGGAAGCTGGCTAGGAGCTTGGGGATTGGAAAAGTTGATGTGGGATACCATTGTCTTTAAACAAATTCGTAGTGCACTTGGAGGCCAGCTCCGGTTTATGCTTTGTGGGGGAGCTCCTTTATCTGGAGATTCGCAACACTTCATCAATATCTGCATGGGGGCTCCTATTGGGCAAGGATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCAGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCTACATTAAGCTTGTTTCTTGGGAAGAAGGAGGGTATCTGACATCAGATAAACCAATGCCAAGGGGAGAGATTGTAGTTGGAGGATTTAGTGTGACAGCTGGTTACTTTAAGAATCAAGAAAAAACTAACGAAGTGTTCAAGGTTGATGAGAAAGGTATGCGCTGGTTTTATACTGGTGATATTGGGCAATTCCACCCTGATGGATGTCTTGAAATCATAGATAGGAAGAAAGATATTGTCAAACTTCAACATGGAGAATATATCTCTCTCGGAAAGGTTGAGGCAGCACTATCATCATGTGATTATGTGGACAATATAATGGTTTATGCAGACCCCTTTCACAATTACTGTGTGGCTCTAGTTGTTGCTTCACAACAGTCCCTGGAGAAGTGGGCCCAACAAGCTGGTATAGATTACCAAGATTTTCCTGATCTGTGTAACAAACCTGAAACTGTCACTGAGGTTCTGCAGTCTATTTCCAAGGTTGCAAAATCTGCAAAGCTGGAGAAAACTGAAATTCCTGCAAAGATTAAGTTGCTGCCGGATCCATGGACTCCTGAATCTGGATTGGTCACTGCAGCTCTCAAGATAAAGAGAGAGCAGCTGAAAGCCAAATTCAAAGACGATCTTCAGAAGTTGTATGCATGA
Predicted protein sequences of Glyma20g07280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g07280.2 sequence type=predicted peptide gene model=Glyma20g07280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDDPKGSSSWLKILNISDIFGWKDHGEYGALAAIVISILVPVLFSALFFGKKKGKIRGVPVEVGGEECFAVRNARKTELVEVPWKGAPTMAHLFEQSCNKYTCNRFLGTRKLIQKELVTSSDGRKFEKLHLGDYEWETYGEVFARVSNFASGLLKLGHNEDSRVAIFSDTRAEWLIALQGCFRQNVTVVTIYASLGEDALIHSLNETEVSTLICDSKQLKKLDAIRSRLISLQNIIYFEDDNEEDAFSGSSSGWTIASFSEVEKLGKESPVEPSLPSKNAIAVIMYTSGSTGLPKGVMITHGNIVATTAAVMTVIPNLGSKDVYLAYLPLAHVFEMAAESVMLAAGCAIGYGSPLTLTDTSNKVKKGTKGDATVLKPTLLTAVPAILDRIRDGVVKKVEQKGGLVKNLFHFAYKRRLAAVKGSWLGAWGLEKLMWDTIVFKQIRSALGGQLRFMLCGGAPLSGDSQHFINICMGAPIGQGYGLTETFAGAAFSEWDDYSVGRVGPPLPCCYIKLVSWEEGGYLTSDKPMPRGEIVVGGFSVTAGYFKNQEKTNEVFKVDEKGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALSSCDYVDNIMVYADPFHNYCVALVVASQQSLEKWAQQAGIDYQDFPDLCNKPETVTEVLQSISKVAKSAKLEKTEIPAKIKLLPDPWTPESGLVTAALKIKREQLKAKFKDDLQKLYA*
>Glyma20g07280.3 sequence type=predicted peptide gene model=Glyma20g07280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDDPKGSSSWLKILNISDIFGWKDHGEYGALAAIVISILVPVLFSALFFGKKKGKIRGVPVEVGGEECFAVRNARKTELVEVPWKGAPTMAHLFEQSCNKYTCNRFLGTRKLIQKELVTSSDGRKFEKLHLGDYEWETYGEVFARVSNFASGLLKLGHNEDSRVAIFSDTRAEWLIALQGCFRQNVTVVTIYASLGEDALIHSLNETEVSTLICDSKQLKKLDAIRSRLISLQNIIYFEDDNEEDAFSGSSSGWTIASFSEVEKLGKESPVEPSLPSKNAIAVIMYTSGSTGLPKGVMITHGNIVATTAAVMTVIPNLGSKDVYLAYLPLAHVFEMAAESVMLAAGCAIGYGSPLTLTDTSNKVKKGTKGDATVLKPTLLTAVPAILDRIRDGVVKKVEQKGGLVKNLFHFAYKRRLAAVKGSWLGAWGLEKLMWDTIVFKQIRSALGGQLRFMLCGGAPLSGDSQHFINICMGAPIGQGYGLTETFAGAAFSEWDDYSVGRVGPPLPCCYIKLVSWEEGGYLTSDKPMPRGEIVVGGFSVTAGYFKNQEKTNEVFKVDEKGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALSSCDYVDNIMVYADPFHNYCVALVVASQQSLEKWAQQAGIDYQDFPDLCNKPETVTEVLQSISKVAKSAKLEKTEIPAKIKLLPDPWTPESGLVTAALKIKREQLKAKFKDDLQKLYA*