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Report for Sequence Feature Glyma20g07051

Feature Type:gene_model
Chromosome:Gm20
Start:9760190
stop:9769241
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g07051
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07650AT Annotation by Michelle Graham. TAIR10: CONSTANS-like 9 | chr3:2442494-2443901 FORWARD LENGTH=372 SoyBaseE_val: 2.00E-154ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0048579GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of long-day photoperiodism, flowering SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PF06203PFAM CCT motif JGI ISS
UniRef100_G7J8U1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein CONSTANS-LIKE protein n=4 Tax=Medicago truncatula RepID=G7J8U1_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233B7D6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B7D6 related cluster n=1 Tax=unknown RepID=UPI000233B7D6 SoyBaseE_val: 0ISS

Proteins Associated with Glyma20g07051
LocusGene SymbolProtein Name
COL9b Constans-like 9b

Expression Patterns of Glyma20g07051
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g07051 not represented in the dataset
Glyma20g07051 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g07051 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g060400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g07051
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma20g07051
>Glyma20g07051.2   sequence type=transcript   gene model=Glyma20g07051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAGGGAAAGCCCAACCTTTTCCTTTCACTATGAAAAGGACATGGCCCCACTTGCATTATATTTTTTCCCCCTTTTGTTTGCACTTTTTATCACCTTTGTTTATGTCACATTACCTACACACACCATTTGCATTATTCTTCTCTTCTTTTCTTTTCATATCTGATCTACATTTATCTATATTCTCTTCTCTTCTCTCTCAACCTTCTCAACAGTCTTATTAGCAGAGAGCACAAGAGAGGACAGGGAAAACAGAAAAAAAAAGTAAGAGAGAGAAAGAGAAATCTGGGTGATTTCTGTTGTTCTCTTGAAAGAGTTCAGCTGCTTCTACTATTTCTACTTCTAGGGCTTTCTTTGTTTTGCTTTGCTTAAAAGTTTTGCATAAAAATAAATAAATATTTTTCTTTTTCTTCTTCTTCTGAAAAAGCAAATCCCTTTTGCTTACCGATCTTGTTCTCATTGTCTTCCTTGCCGTGAGAATTCGGCTTCTGCATCTTCAGATAAGAAGGGGGAACTTCTCTATTTTTTGCGGCATATCGTGGTTTGTAAAGACTGTTTCTAGGTGGAGATTCATTAATTGACACTAAGGTGCAAGAGAAAAGTGAGTCTAAAGATGGGTTATATATGTGATTTTTGTGGAGACCAGAGATCCATGGTGTACTGCCGCTCTGACGCTGCATGCTTATGTTTGTCTTGTGATCGGAATGTTCATTCTGCTAATGCCCTTTCTAAGCGTCATTCACGCACCCTTTTATGCGAGAGATGCAATTCACAACCTGCCTTTGTAAGGTGTGTTGAAGAGAAGATTTCACTTTGTCAGAATTGCGACTGGTTGGGTCATGGCACCTCTACATCTTCTTCAACACATAAGAGACAAGCAATCAATTGCTACTCTGGCTGCCCTTCAGCGGCAGAACTGTCTTCGATATGGTCATTTGTGTTAGAAATCGCTGCCATAAGTGAGTCTACATGTGAGCAAGAACTAGGCTTAATGAGTATTAATGAGAACAAGTGTGTTGGTGTTCCTCCGGAAGACCAGAATGTGTCTGGTTCAGATGAAGTTACCGATCTACCTGCTTTGAACAAGTCTTTGGTTGGTGCATCTTTGATGCCTGAATCAAGCTCCGAACCTTGTATTCTGGACCAGCCAGCTGGACCTACCAATGAATGTCTGCCAAAGTTATACTGTCCTGCTACAAAATGCCCTGCCTTATCTGAAGATGATAATCTGTATGATGATTTCAACATGGATGAAGTGGATCTAGATCTTGAGAACTATGAAGAACTTTTTGGTATGGCCCTCAGTCATTCTGAGGAGCTTTTTGAAAATGGTGGAATTGATAGCTTGTTTGGGACAAAAGGCATGTCTGCTGGAGATTCCAATTGTCAGGAAGCTATTGCTGCTGAGGGGTCGTCGGTTGGACAGGTCAATGCAATGCAACCAGCTTGCAGCAATGCAGCGTCTGCAGATTCCATTTTGAGTACTAAAACTGAACCAATTCTTTGTTTTACTGGAAGGCAAACTCAATCAAACCTTTCTTTTTCTGGTGTTACTGGAGAGAGTAGTGCTGGAGACTATCAAGACTGTGGGGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGTTTGCTCCTTGTCCGGAGAATTCCCTACAATCCGCCAACCGTAGTAATGCTGTCATGCGGTACAAGGAAAAGAAGAAGACACGGATGTTTGACAAAAAAGTTAGGTATGCCTCTCGCAAGGCAAGGGCTGATGTCAGAAGGCGTGTGAAAGGGCGGTTTGTCAAAGCCGGTGACGTCTATGATTATGACCCTTTGAGCACAACCAGAAGCTGCTGAATGTACAATTTTTAATCATGTTTTATAAAAAGAAACAGTCCTATAGTAGCAAAAGAAAAACAGTTTCCTGAAAAAAATGGATGAAAATTTGATGCATTCTTTGTCCCTGCAATGACAAGCTATCTGATTTTATTACAGGAGGGGCCTGGATTGATGTTCTTCGAGGAGGAAAAGGGCTGCGTTCAACAGTGTAAGCTCGGGATCAGGAGCCGACTCTTTGTCCTTCACTGTGAAGGATGTCCAACTTGTGATAATGATGTTATCACAAAGTGCCCCCCCCCTTCAGGCAATGGTGTTTGGATTGCCTTTATGTTAAAGCTTGGCAATTTCTGCTGCATAATTCCAAGAATTCAAAAAGCCTTCTTCTAAGTTCTTTGGCCTTAACCATACTTCCATGCCTGTGATGTGGTCATGTAAACTCTCCCCTCTGCTATAGTCACATGTACAAGTGCCTGAGATGGCATGATAAGTGGCTTAACAAAGATTGTAAATTGTAATATTTGGCCAACTCTTACCTTTGACATGTATAGCACACAATCTACATGTATATTTTTGCTCATCTCTTTTTATGTAATCAGACAAAAAATGTAAATTCAATCTCCCATGTATAGAATAGGGTACTATGCATGTTGATGGTTTGTAGCACTTTTCAATTATTTTCTTTTCATTTTGTTTCTTGCATCTTTTGTATTGATTAATTCAGTCTGTGGTGAAATATGTATTTCATTTTGAAGGAATTTCTTTTTCTATACTCGTTGGCATCTTATGTTGTATTGAGAATTTTGTATAATCTTGTAAGTTGTTAATGAAGAATTTTTCAAGTTTCAATAGAAGACGGGACATATGTTTGTTTTACTTTCTTCTTTGTATGTTTGATAATGTTTCTTTAATTTGATCGACTATCATACAATATGCTATCTGCAGAGGTTTTATTTCATTCATGATAATTTTCGGCAAGTCATTTTATATTAAACCAGCAATGGAAGAAAGAAATAAAGGAGAAAATAGATGTCTGTTGATTACAATGAAGAAAGAAATGATGAAGAAAATAGAACGTGTGTATAGTATATATTCGGATACAACAATTAGTTAGGATTTGTGAAACTAACTTTCGAATTCAAAAATTACAGATCAGATAGGGTGAAGAAAAAAAAAAAAACTGAAACTGATTCTATTAGAAAGTACTCTCCTTTATTTGGTGCAGATTTAAGAAACTTGGCCATCAAGTCGAGCTTGCTCTAGATAACTCTGCTATCTTTTCTCTTATTAAAATCATATCACCAATTCATTTTTTTTTTTTATCTTTTCTA
Coding sequences of Glyma20g07051
>Glyma20g07051.1   sequence type=CDS   gene model=Glyma20g07051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTATATATGTGATTTTTGTGGAGACCAGAGATCCATGGTGTACTGCCGCTCTGACGCTGCATGCTTATGTTTGTCTTGTGATCGGAATGTTCATTCTGCTAATGCCCTTTCTAAGCGTCATTCACGCACCCTTTTATGCGAGAGATGCAATTCACAACCTGCCTTTGTAAGGTGTGTTGAAGAGAAGATTTCACTTTGTCAGAATTGCGACTGGTTGGGTCATGGCACCTCTACATCTTCTTCAACACATAAGAGACAAGCAATCAATTGCTACTCTGGCTGCCCTTCAGCGGCAGAACTGTCTTCGATATGGTCATTTGTGTTAGAAATCGCTGCCATAAGTGAGTCTACATGTGAGCAAGAACTAGGCTTAATGAGTATTAATGAGAACAAGTGTGTTGGTGTTCCTCCGGAAGACCAGAATGTGTCTGGTTCAGATGAAGTTACCGATCTACCTGCTTTGAACAAGTCTTTGGTTGGTGCATCTTTGATGCCTGAATCAAGCTCCGAACCTTGTATTCTGGACCAGCCAGCTGGACCTACCAATGAATGTCTGCCAAAGTTATACTGTCCTGCTACAAAATGCCCTGCCTTATCTGAAGATGATAATCTGTATGATGATTTCAACATGGATGAAGTGGATCTAGATCTTGAGAACTATGAAGAACTTTTTGGTATGGCCCTCAGTCATTCTGAGGAGCTTTTTGAAAATGGTGGAATTGATAGCTTGTTTGGGACAAAAGGCATGTCTGCTGGAGATTCCAATTGTCAGGAAGCTATTGCTGCTGAGGGGTCGTCGGTTGGACAGGTCAATGCAATGCAACCAGCTTGCAGCAATGCAGCGTCTGCAGATTCCATTTTGAGTACTAAAACTGAACCAATTCTTTGTTTTACTGGAAGGCAAACTCAATCAAACCTTTCTTTTTCTGGTGTTACTGGAGAGAGTAGTGCTGGAGACTATCAAGACTGTGGGGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGTTTGCTCCTTGTCCGGAGAATTCCCTACAATCCGCCAACCGTAGTAATGCTGTCATGCGGTACAAGGAAAAGAAGAAGACACGGATGTTTGACAAAAAAGTTAGGTATGCCTCTCGCAAGGCAAGGGCTGATGTCAGAAGGCGTGTGAAAGGGCGGTTTGTCAAAGCCGGTGACGTCTATGATTATGACCCTTTGAGCACAACCAGAAGCTGCTGA

>Glyma20g07051.2   sequence type=CDS   gene model=Glyma20g07051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTATATATGTGATTTTTGTGGAGACCAGAGATCCATGGTGTACTGCCGCTCTGACGCTGCATGCTTATGTTTGTCTTGTGATCGGAATGTTCATTCTGCTAATGCCCTTTCTAAGCGTCATTCACGCACCCTTTTATGCGAGAGATGCAATTCACAACCTGCCTTTGTAAGGTGTGTTGAAGAGAAGATTTCACTTTGTCAGAATTGCGACTGGTTGGGTCATGGCACCTCTACATCTTCTTCAACACATAAGAGACAAGCAATCAATTGCTACTCTGGCTGCCCTTCAGCGGCAGAACTGTCTTCGATATGGTCATTTGTGTTAGAAATCGCTGCCATAAGTGAGTCTACATGTGAGCAAGAACTAGGCTTAATGAGTATTAATGAGAACAAGTGTGTTGGTGTTCCTCCGGAAGACCAGAATGTGTCTGGTTCAGATGAAGTTACCGATCTACCTGCTTTGAACAAGTCTTTGGTTGGTGCATCTTTGATGCCTGAATCAAGCTCCGAACCTTGTATTCTGGACCAGCCAGCTGGACCTACCAATGAATGTCTGCCAAAGTTATACTGTCCTGCTACAAAATGCCCTGCCTTATCTGAAGATGATAATCTGTATGATGATTTCAACATGGATGAAGTGGATCTAGATCTTGAGAACTATGAAGAACTTTTTGGTATGGCCCTCAGTCATTCTGAGGAGCTTTTTGAAAATGGTGGAATTGATAGCTTGTTTGGGACAAAAGGCATGTCTGCTGGAGATTCCAATTGTCAGGAAGCTATTGCTGCTGAGGGGTCGTCGGTTGGACAGGTCAATGCAATGCAACCAGCTTGCAGCAATGCAGCGTCTGCAGATTCCATTTTGAGTACTAAAACTGAACCAATTCTTTGTTTTACTGGAAGGCAAACTCAATCAAACCTTTCTTTTTCTGGTGTTACTGGAGAGAGTAGTGCTGGAGACTATCAAGACTGTGGGGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGTTTGCTCCTTGTCCGGAGAATTCCCTACAATCCGCCAACCGTAGTAATGCTGTCATGCGGTACAAGGAAAAGAAGAAGACACGGATGTTTGACAAAAAAGTTAGGTATGCCTCTCGCAAGGCAAGGGCTGATGTCAGAAGGCGTGTGAAAGGGCGGTTTGTCAAAGCCGGTGACGTCTATGATTATGACCCTTTGAGCACAACCAGAAGCTGCTGA
Predicted protein sequences of Glyma20g07051
>Glyma20g07051.1   sequence type=predicted peptide   gene model=Glyma20g07051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLGHGTSTSSSTHKRQAINCYSGCPSAAELSSIWSFVLEIAAISESTCEQELGLMSINENKCVGVPPEDQNVSGSDEVTDLPALNKSLVGASLMPESSSEPCILDQPAGPTNECLPKLYCPATKCPALSEDDNLYDDFNMDEVDLDLENYEELFGMALSHSEELFENGGIDSLFGTKGMSAGDSNCQEAIAAEGSSVGQVNAMQPACSNAASADSILSTKTEPILCFTGRQTQSNLSFSGVTGESSAGDYQDCGASSMLLMGEPPWFAPCPENSLQSANRSNAVMRYKEKKKTRMFDKKVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSTTRSC*

>Glyma20g07051.2   sequence type=predicted peptide   gene model=Glyma20g07051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLGHGTSTSSSTHKRQAINCYSGCPSAAELSSIWSFVLEIAAISESTCEQELGLMSINENKCVGVPPEDQNVSGSDEVTDLPALNKSLVGASLMPESSSEPCILDQPAGPTNECLPKLYCPATKCPALSEDDNLYDDFNMDEVDLDLENYEELFGMALSHSEELFENGGIDSLFGTKGMSAGDSNCQEAIAAEGSSVGQVNAMQPACSNAASADSILSTKTEPILCFTGRQTQSNLSFSGVTGESSAGDYQDCGASSMLLMGEPPWFAPCPENSLQSANRSNAVMRYKEKKKTRMFDKKVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSTTRSC*






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