SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G47650 | AT | Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 2 | chr5:19310391-19312084 REVERSE LENGTH=278 | SoyBase | E_val: 3.00E-108 | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| GO:0047631 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ADP-ribose diphosphatase activity | SoyBase | N/A | ISS |
| GO:0051287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD binding | SoyBase | N/A | ISS |
| KOG0648 | KOG | Predicted NUDIX hydrolase FGF-2 and related proteins | JGI | ISS | |
| PTHR13994 | Panther | NUDIX HYDROLASE RELATED | JGI | ISS | |
| PTHR13994:SF2 | Panther | MUTT DOMAIN PROTEIN | JGI | ISS | |
| PF00293 | PFAM | NUDIX domain | JGI | ISS | |
| UniRef100_G7JH45 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nudix hydrolase n=1 Tax=Medicago truncatula RepID=G7JH45_MEDTR | SoyBase | E_val: 2.00E-169 | ISS |
| UniRef100_I1NDT8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NDT8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g06680 not represented in the dataset |
Glyma20g06680 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g062000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g06680.1 sequence type=CDS gene model=Glyma20g06680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGATGAGTTCTAGAGCTAGTAAGCTTGTTTCTTCCTCCCTTTTGGCAGCTTCAAAATTGTTACTTAAATCTTCTTCTTCTGCTCCTCCACTTCAAACTACAGCTCTTGTTGGCTCAATGGTCCCTAAAGTTCAAGGCCCGAAGCACAGTTCTGGTTTCCCTAGATCATACATGTCAGCTACCTTAGCTTCTCTGGCCAAGGAAGAGGAAGTGCCAAGTAAAGGCATTAATACACTCAGAGCAATTGAAGACCAACATGGGGGAGTTATTGTAAACATTGAGAACCCTATGGATTCCTCAGTTTTCTCTTCTTTGCTTGAAGCTTCAATATCACAATGGAGGGAACAGGGAAAGAAGGGAGTGTGGATCAAGCTGCCCAGAGAACATTCAAATCTTGTGGATTCTGCAGTTAAGGCTGGATTCCGATTCCACCATGCTGAACCAGATTACTTGATGCTCGTGAATTGGATTCCCAATACTCCCGATACACTTCCTGCAAATGCTTCGCACCGCGTTGCTGTTGGTGCTTTTGTCATGAATGCCAATAGGGAGGTGCTTGTGGTTCAGGAGAGCAATGGCAGGTTTAGTGGCCAAGGAATCTGGAAGTTGCCTACCGGAGGCGTTGATGAAGGTGAAGATATTTGTACTGCTGCAGTTAGAGAAGTCAAAGAAGAGACAGGGATAGATACAAAGTTTGTGGAGGTCATAGCATTCAAGGAAAGGCATAAATCTTTCTTCCGAAAATCAGAGTTGTTCTTCATTTGCATGTTGCAACCTCATTCCTTTAAAATTCAGAGACAAGTTTCAGAAATTGAGGCAGCTCAGTGGATGGCAATTGAGGATTACATGGCCCAGCCTTTTGTCCGAGAAAATGAGCTATTTGACTTTCTTACCAAAATAGGGTTATCAAAATTTAATGGCAAATACAGTGGCTTTTCCACCGTACTCTCTAGCACTTCCTCTTGCAAGAAATCTTACTTTTACTTCAACAACAACGACGCTGGTCACATTTAG
>Glyma20g06680.1 sequence type=predicted peptide gene model=Glyma20g06680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMMSSRASKLVSSSLLAASKLLLKSSSSAPPLQTTALVGSMVPKVQGPKHSSGFPRSYMSATLASLAKEEEVPSKGINTLRAIEDQHGGVIVNIENPMDSSVFSSLLEASISQWREQGKKGVWIKLPREHSNLVDSAVKAGFRFHHAEPDYLMLVNWIPNTPDTLPANASHRVAVGAFVMNANREVLVVQESNGRFSGQGIWKLPTGGVDEGEDICTAAVREVKEETGIDTKFVEVIAFKERHKSFFRKSELFFICMLQPHSFKIQRQVSEIEAAQWMAIEDYMAQPFVRENELFDFLTKIGLSKFNGKYSGFSTVLSSTSSCKKSYFYFNNNDAGHI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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