Glyma20g06680 - SoyBase

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Report for Sequence Feature Glyma20g06680

Feature Type:	gene_model
Chromosome:	Gm20
Start:	9022941
stop:	9027020
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g06680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47650	AT	Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 2 \| chr5:19310391-19312084 REVERSE LENGTH=278	SoyBase	E_val: 3.00E-108	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0047631	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP-ribose diphosphatase activity	SoyBase	N/A	ISS
GO:0051287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NAD binding	SoyBase	N/A	ISS
KOG0648	KOG	Predicted NUDIX hydrolase FGF-2 and related proteins	JGI		ISS
PTHR13994	Panther	NUDIX HYDROLASE RELATED	JGI		ISS
PTHR13994:SF2	Panther	MUTT DOMAIN PROTEIN	JGI		ISS
PF00293	PFAM	NUDIX domain	JGI		ISS
UniRef100_G7JH45	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nudix hydrolase n=1 Tax=Medicago truncatula RepID=G7JH45_MEDTR	SoyBase	E_val: 2.00E-169	ISS
UniRef100_I1NDT8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NDT8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g06680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g06680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g062000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g06680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g06680

Limit To All Plant Sequences

>Glyma20g06680.1   sequence type=CDS   gene model=Glyma20g06680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATGAGTTCTAGAGCTAGTAAGCTTGTTTCTTCCTCCCTTTTGGCAGCTTCAAAATTGTTACTTAAATCTTCTTCTTCTGCTCCTCCACTTCAAACTACAGCTCTTGTTGGCTCAATGGTCCCTAAAGTTCAAGGCCCGAAGCACAGTTCTGGTTTCCCTAGATCATACATGTCAGCTACCTTAGCTTCTCTGGCCAAGGAAGAGGAAGTGCCAAGTAAAGGCATTAATACACTCAGAGCAATTGAAGACCAACATGGGGGAGTTATTGTAAACATTGAGAACCCTATGGATTCCTCAGTTTTCTCTTCTTTGCTTGAAGCTTCAATATCACAATGGAGGGAACAGGGAAAGAAGGGAGTGTGGATCAAGCTGCCCAGAGAACATTCAAATCTTGTGGATTCTGCAGTTAAGGCTGGATTCCGATTCCACCATGCTGAACCAGATTACTTGATGCTCGTGAATTGGATTCCCAATACTCCCGATACACTTCCTGCAAATGCTTCGCACCGCGTTGCTGTTGGTGCTTTTGTCATGAATGCCAATAGGGAGGTGCTTGTGGTTCAGGAGAGCAATGGCAGGTTTAGTGGCCAAGGAATCTGGAAGTTGCCTACCGGAGGCGTTGATGAAGGTGAAGATATTTGTACTGCTGCAGTTAGAGAAGTCAAAGAAGAGACAGGGATAGATACAAAGTTTGTGGAGGTCATAGCATTCAAGGAAAGGCATAAATCTTTCTTCCGAAAATCAGAGTTGTTCTTCATTTGCATGTTGCAACCTCATTCCTTTAAAATTCAGAGACAAGTTTCAGAAATTGAGGCAGCTCAGTGGATGGCAATTGAGGATTACATGGCCCAGCCTTTTGTCCGAGAAAATGAGCTATTTGACTTTCTTACCAAAATAGGGTTATCAAAATTTAATGGCAAATACAGTGGCTTTTCCACCGTACTCTCTAGCACTTCCTCTTGCAAGAAATCTTACTTTTACTTCAACAACAACGACGCTGGTCACATTTAG

Predicted protein sequences of Glyma20g06680

Limit To All Plant Sequences

>Glyma20g06680.1   sequence type=predicted peptide   gene model=Glyma20g06680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMMSSRASKLVSSSLLAASKLLLKSSSSAPPLQTTALVGSMVPKVQGPKHSSGFPRSYMSATLASLAKEEEVPSKGINTLRAIEDQHGGVIVNIENPMDSSVFSSLLEASISQWREQGKKGVWIKLPREHSNLVDSAVKAGFRFHHAEPDYLMLVNWIPNTPDTLPANASHRVAVGAFVMNANREVLVVQESNGRFSGQGIWKLPTGGVDEGEDICTAAVREVKEETGIDTKFVEVIAFKERHKSFFRKSELFFICMLQPHSFKIQRQVSEIEAAQWMAIEDYMAQPFVRENELFDFLTKIGLSKFNGKYSGFSTVLSSTSSCKKSYFYFNNNDAGHI*

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