|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G07740 | AT | Annotation by Michelle Graham. TAIR10: homolog of yeast ADA2 2A | chr3:2470014-2472485 REVERSE LENGTH=477 | SoyBase | E_val: 4.00E-25 | ISS |
GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
GO:0048522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
PTHR12374 | Panther | TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED | JGI | ISS | |
PTHR12374:SF12 | Panther | MYB FAMILY TRANSCRIPTION FACTOR | JGI | ISS | |
UniRef100_B9R7L4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcriptional adaptor, putative n=1 Tax=Ricinus communis RepID=B9R7L4_RICCO | SoyBase | E_val: 3.00E-28 | ISS |
UniRef100_UPI000233DCCE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DCCE related cluster n=1 Tax=unknown RepID=UPI000233DCCE | SoyBase | E_val: 4.00E-46 | ISS |
Glyma20g06645 not represented in the dataset |
Glyma20g06645 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.20g062200 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g06645.1 sequence type=CDS gene model=Glyma20g06645 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGAAAGTTGCATTTTGTTTAGTAGAGTCTCGAGCAGATTGGAGCATTGGAGAGAAGAAACCTAAATTATCAGGCGAAGATAGGCCTTCTATGACAGATTTGAGTGGATACAGTTTTAAGCGAGAAGAATTTGATGTTGAATATGACAATGATGCAGAACAAGTGTTGGCTGATATGGAATTTAAGGACACTGATACTAAAGCTGAATATGCAATGAAACTGCACGTGCTCCATATCTACTCAAAAAGGTAA
>Glyma20g06645.1 sequence type=predicted peptide gene model=Glyma20g06645 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLKVAFCLVESRADWSIGEKKPKLSGEDRPSMTDLSGYSFKREEFDVEYDNDAEQVLADMEFKDTDTKAEYAMKLHVLHIYSKR*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||