SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G22142 | AT | Annotation by Michelle Graham. TAIR10: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:7803604-7808046 REVERSE LENGTH=1480 | SoyBase | E_val: 6.00E-44 | ISS |
| PF00234 | PFAM | Protease inhibitor/seed storage/LTP family | JGI | ISS | |
| UniRef100_D7L1K8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Predicted protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L1K8_ARALL | SoyBase | E_val: 1.00E-46 | ISS |
| UniRef100_Q9LIE8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Bifunctional inhibitor/lipid transfer protein/seed storage protein-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9LIE8_ARATH | SoyBase | E_val: 3.00E-41 | ISS |
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Glyma20g06290 not represented in the dataset |
Glyma20g06290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g062700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g06290.1 sequence type=CDS gene model=Glyma20g06290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAAGATTGCCCTAGCCAATGTCCTCTTGGTCCTTCTCTTGAACTTGAGCACTTTGCTCAATGTTCTTGCTTGTCCCTATTGCCCTTACCCATCTCCCAAGCCTCCTCCAAAAAAGCCTCCCATTGTGAAACCACCAGTTCACAAACAACCAAAACCATGTCCACCACCCAAGTCATCTCCAAAACCACCCCATGTACACCCACCCTATGTCCCAAAACCTCCTCACTACCCTAAACCACCAGTTCATCCACATCCACCCCATGTCCCAAAACCTCACCCTAAGCCTCCACTGCATCCACATCCACCTTATGTCCCAAAACCACCAGTTGTTAAACCACCCTATGTCCCGAAGCCACCAGTTGTGAACCCTCCCTATGTCCCAAAACCACCAGTTGTGCCAGTTACACCACCATATGTTCCAAAACCACCAATTGTGAACCCTCCTTATGTCCCAAAACCACCTGTTGTCCCAGTTAGACCACCATATATCCCAAAACCACCAGTTGTGCCAGTTACACCACCTTATGTGCCAAAACCACCCATTGTTTATCCACCTGTAGTACCAACACCACCAATTGTGACACCACCTATTGTGTATCCACCTGTAGTCCCTGTGCCACCATTACCACCCATTGTGACTCCACCAAACCCTCCAAGTGAAACACCATGTCCACCACCACCACCACCACCAGTGGTGCCATATCCACCACCAGCACAACCAACATGCCCCATTGACAGCCTAAAACTGGGGGCATGTGTGGATGTGCTCGGTGGCCTCATACACATTGGCATAGGCAGCAGTGCCAAGCAGACATGTTGTCCAGTGCTTGCAGGGCTTGTGGACTTGGATGCTGCAGTGTGTCTCTGCACAACCATTAGGGCTAAGATTCTCAACATCAACATCATCATCCCTATTGCTCTTCAGCTTCTCATTGACTGTGGCAAGACCCCACCTGATGGATTCAAGTGTGCAGATAGTTAG
>Glyma20g06290.1 sequence type=predicted peptide gene model=Glyma20g06290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKIALANVLLVLLLNLSTLLNVLACPYCPYPSPKPPPKKPPIVKPPVHKQPKPCPPPKSSPKPPHVHPPYVPKPPHYPKPPVHPHPPHVPKPHPKPPLHPHPPYVPKPPVVKPPYVPKPPVVNPPYVPKPPVVPVTPPYVPKPPIVNPPYVPKPPVVPVRPPYIPKPPVVPVTPPYVPKPPIVYPPVVPTPPIVTPPIVYPPVVPVPPLPPIVTPPNPPSETPCPPPPPPPVVPYPPPAQPTCPIDSLKLGACVDVLGGLIHIGIGSSAKQTCCPVLAGLVDLDAAVCLCTTIRAKILNINIIIPIALQLLIDCGKTPPDGFKCADS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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