SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| PF00098 | PFAM | Zinc knuckle | JGI | ISS | |
| UniRef100_I1NDT0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NDT0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8H6Q8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CTV.20 n=1 Tax=Citrus trifoliata RepID=Q8H6Q8_PONTR | SoyBase | E_val: 1.00E-93 | ISS |
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Glyma20g06236 not represented in the dataset |
Glyma20g06236 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g06236.1 sequence type=CDS gene model=Glyma20g06236 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TACCTAGAACAACTTACAACCAAGAACAAGAGGACGACCAAAAGTCGATCCAATCCCCAACATACTCTTCTATGGAACCTTATGATGTTATCTGACAACTTTAGCATTGATAAGGAAACCCTTAGGAAAGATTTTTATTCTCCGGAGAATGAACCTCAAAGGAGATGGTTTTTCCAACATTATAAGGGTACAAACAGAAAACAAATCCAAGACAAGTTCTACGAATTTGTCGAAAGAGTCAAACAAGACATCATAGGTGATCCAACAACAAATGCCATAACAAATTGGCAAGTGAAGGATGGTGAGTTAATCCAATCGGAATTACCTCCCGCAACACAATTTCAACTACCGAATATCAAAGACAGTAACAATAAACCTGTTATGGCAATTCCATTCAAGACAAAAGATGTCAACGAGGAAGTAACCTCTAAAGACATTAAGAGCCTAATGGAACAAGCAAATTATACCAATAAATACTTCCAAGCTTTAGGAGAAACCATTAAAACTAAGGTAGTTCATAAACAAAAATCAATTGAGGAAGCTTCGCCAAGCATCCCCATTGAAAAACCGTTATTCAAACCTTTCAAAGTTAGTGAGAAGGCTAAACGAAAAATTAGGGAACTTAGAAAAACTAAATCCTTAATTGAAGGCGTAGGTGACAATCATAGTGAATTACTAAACAAGATTGGTAGTTTAATTAAGGTCATTCGAGATACTCCCCAAGCCTCGAAAAATACTTCCAAAATGGTAACAAGAAGTACCTCCAAATTAATTAATGTTATTAATGAAGATAGTGACCAAAACTCAGATAACACAACTGAGATAGGATCAGTGTCAGAAAAGAATATAAATCCAATTAATTCCAAACACTGGAAAACACCCTCCAAATTATATTATCAACGTCCAACTGCCCCTGACCTTCTATTAGAAGAAAGAGGTGAAAACAATTTTAAGAGTTTTAGTGCAAACAACATCTATGAATGGAACATAGATGCACAAATGGAGTATAACATCATGAATACACTCCAACATATGACCATGGTAGCTACGGCTTACCAAACCTCCCACGAGTGTTCAGAAGAAACCATTATAGATATCTTAGTGGCAGGATTTTCTGGACAGCTAAAAGGATGCGCAGTTAAGACGGACCTCAATGGAAAAGTCATTACTAATGACGATGATAAAGAGATTCCTGGCGCTGTTAACACATTAATTTTTACAATAGCCCAACATTTCATTGGAGACCCATCCTTGTGGAAAGATAGGTCAGCAGAATTATTATCAAATCTTAAGTGTAGAACCTTGGCGGATTTTAGGTGGTATAGAGATACTTTCCCAACTAGGGTTTACACAAGAGAAGATAGTCAACAACCTTTATGGAAAGAAAAATTTATAGCCGGTCTTCCCAGATCATTAGGAGACAAGGTTAGAGATAAAATTCGTAGTCAATCTGCCAATGGAGACATTCCATATGAAAACTTAAGCTATGGTCAATTAATTTCCTATGTCCAAAAGGTAGCCTTAAAATTCTGCCAGGACGACAAAATTCAGAGGCAATTAGCCAAAGAAAAAGCTCAAACAAAGAGGGATTTAGGTTCCTTCTGTGAACAATTTGGCTTACCAGCCTGTCCAAAACAAAAGAAGAAACAAACCTCTAGGAAAGAAACCCAGGATCATAAGCCAGCCAATAGAAGAAGATTTTCAAAAAGAAGATACTCACATAAACCATCAACCAGTAGAGAAATGGAAAATCCTAAAAAAACAAAAAAAATAACGTGCTACAATTGTGGAAAACAAGGCCACATCAGCAAATATTGTAGACTAAAAAAGAAGTTAAGAAACCTTAACCTAGAACCCGCAATTGAAGAGCAAATAAATAATTTGCTTAAAGAAACCTCGGAGGAAGAAACAGAAACTTCATCCTCCGTGCTTTCCGATGAAAACCTAAACCTAATCCAACAAGATGACCAACTATCATCAACAGATAATGATGATGGGCAAATCAATACTCTAACGAGAGAACAAGATCTCTTGTTTGAAGCAATCAATTCCATACCTGATCCCCAGGAAAAGAAAGTTTTCCTGGAAAAGCTCAAGAAAACATTAGAGGTAAAACCTAGACAAAAGGATTTTATCACAAACAACAAATTTGATGTAAGTAACATACTCAAGAGATTAGAAAATTCCTCAACCAAACCAACGACAATCCAAGATCTCCAAACAGAGATAAAAAATCTAAAAAGAGAGGTAAAAGAACTTCGTCAACAACAAGAAATTCATCACATCATTCTTTCTCAGCTTGAGGAAGATAGTGATTCTGAAAGTACCAACAACAGTGAAGAAAACCAACCAGAAAATTTAGAAGATGATATGTTTATGGGATTAATCAACAAGATTAAAATCCAAAAATTTTACATAAACATAAAAATAATTATTAATGATTTAGTTTTAGAAACAATGGCCCTATTTGACACAGGGGCTGATTCAAACTGCATTTTAGAAGGATTAATTCCTACAAAATTCTTTAAGAAAACCTCAGAAAAATTAAGTACCGCAAACGGCTCAAAATTAAAAATTAATTTTAAGCTATCAAATGCAATCATTGAAAACCAAGGTCTTAAGATTATCACAAACTTTCTTCTGGTAAAAAACCTTAAGAATGAAGTAATCTTAGGAACGCCCTTCATTAGAGCCTTGTTTCCCATCCAAATATCTAATGAAGGAATAACCACAAATTATTTAGGAAGAAAAATTATATTTAATTTTTCTACTAAACCAATTTCCAGAAATATAAATCTTATAAAAAATAAGATTAATCAAATTAACTTCTTAAAAGAAGAAGTATCTTTTAATAATATTCAGATACAACTGGGAAAACCCCAA
>Glyma20g06236.1 sequence type=predicted peptide gene model=Glyma20g06236 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high YLEQLTTKNKRTTKSRSNPQHTLLWNLMMLSDNFSIDKETLRKDFYSPENEPQRRWFFQHYKGTNRKQIQDKFYEFVERVKQDIIGDPTTNAITNWQVKDGELIQSELPPATQFQLPNIKDSNNKPVMAIPFKTKDVNEEVTSKDIKSLMEQANYTNKYFQALGETIKTKVVHKQKSIEEASPSIPIEKPLFKPFKVSEKAKRKIRELRKTKSLIEGVGDNHSELLNKIGSLIKVIRDTPQASKNTSKMVTRSTSKLINVINEDSDQNSDNTTEIGSVSEKNINPINSKHWKTPSKLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNIDAQMEYNIMNTLQHMTMVATAYQTSHECSEETIIDILVAGFSGQLKGCAVKTDLNGKVITNDDDKEIPGAVNTLIFTIAQHFIGDPSLWKDRSAELLSNLKCRTLADFRWYRDTFPTRVYTREDSQQPLWKEKFIAGLPRSLGDKVRDKIRSQSANGDIPYENLSYGQLISYVQKVALKFCQDDKIQRQLAKEKAQTKRDLGSFCEQFGLPACPKQKKKQTSRKETQDHKPANRRRFSKRRYSHKPSTSREMENPKKTKKITCYNCGKQGHISKYCRLKKKLRNLNLEPAIEEQINNLLKETSEEETETSSSVLSDENLNLIQQDDQLSSTDNDDGQINTLTREQDLLFEAINSIPDPQEKKVFLEKLKKTLEVKPRQKDFITNNKFDVSNILKRLENSSTKPTTIQDLQTEIKNLKREVKELRQQQEIHHIILSQLEEDSDSESTNNSEENQPENLEDDMFMGLINKIKIQKFYINIKIIINDLVLETMALFDTGADSNCILEGLIPTKFFKKTSEKLSTANGSKLKINFKLSNAIIENQGLKIITNFLLVKNLKNEVILGTPFIRALFPIQISNEGITTNYLGRKIIFNFSTKPISRNINLIKNKINQINFLKEEVSFNNIQIQLGKPQ
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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