SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G17770 | AT | Annotation by Michelle Graham. TAIR10: NADH:cytochrome B5 reductase 1 | chr5:5864543-5866495 REVERSE LENGTH=281 | SoyBase | E_val: 4.00E-152 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0022900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: electron transport chain | SoyBase | N/A | ISS |
| GO:0042732 | GO-bp | Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0004128 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cytochrome-b5 reductase activity, acting on NAD(P)H | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG0534 | KOG | NADH-cytochrome b-5 reductase | JGI | ISS | |
| PTHR19370 | Panther | NADH-CYTOCHROME B5 REDUCTASE | JGI | ISS | |
| PTHR19370:SF8 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00175 | PFAM | Oxidoreductase NAD-binding domain | JGI | ISS | |
| PF00970 | PFAM | Oxidoreductase FAD-binding domain | JGI | ISS | |
| UniRef100_G7J636 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NADH cytochrome b5 reductase n=1 Tax=Medicago truncatula RepID=G7J636_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001817FB0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001817FB0 related cluster n=1 Tax=unknown RepID=UPI0001817FB0 | SoyBase | E_val: 0 | ISS |
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Glyma20g05640 not represented in the dataset |
Glyma20g05640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g057600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g05640.1 sequence type=CDS gene model=Glyma20g05640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATTTTCGCAGAGTCACAGGGTAGAGATGATAAGCATGGCAGTTGCTCTTGTTGCCATTGTTGGTGGCACCGCTTACTATTACTACGTCACCAAGAAGCCAAAAGGGTGCTTGGATCCTGAGAACTTCAAAGAATTTAAACTTGTTAAACGCACTCAACTCAGCCATAATGTTGCCACGTTCCGATTTGATCTTCCTACTCCTAAGTCAGTGTTGGGACTTCCTATTGGACAACATATCAGCTGCAGAGGGAAGGATAGTCTTGGTGAAGAAGTTGTGAAACCATATACTCCTACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTGAAGATGTATCCACAAGGACGGATGTCTCATCACTTTAGGGAGATACGTGAAGGTGATTACATGGCTGTGAAGGGACCAAAGGGACGTTTTAAGTACCAGCCCAACCAAGTAAGAGCTTTGGGTATGATTGCTGGTGGCACTGGCATCACCCCAATGTTTCAAGTTACAAGAGCTATATTAGAAAACCAACAGGACAAAACCAACATAAATTTGATATATGCCAATGTCACATTTGATGACATTCTTTTGAAGGAAGAGCTGGATGCCTTTGCCATTAAGTTCCCTAATCAATTCAAAGTTTACTATGTTCTAAATCAGCCACCAGAAATATGGGACGGTGGTGTTGGATTCGTCACTAAGGAAATGATCCAAACAGATTTCCCTGCACCAGCATCAGATATTAAGATATTAAGGTGTGGACCACCTCCCATGAACAAGGCTATGGCTGCTAATCTTGAAGCTCTTGGATACAGTCCCCAAATGCAGTTTCAGTTTTAA
>Glyma20g05640.1 sequence type=predicted peptide gene model=Glyma20g05640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEFSQSHRVEMISMAVALVAIVGGTAYYYYVTKKPKGCLDPENFKEFKLVKRTQLSHNVATFRFDLPTPKSVLGLPIGQHISCRGKDSLGEEVVKPYTPTTLDTDVGYFELVVKMYPQGRMSHHFREIREGDYMAVKGPKGRFKYQPNQVRALGMIAGGTGITPMFQVTRAILENQQDKTNINLIYANVTFDDILLKEELDAFAIKFPNQFKVYYVLNQPPEIWDGGVGFVTKEMIQTDFPAPASDIKILRCGPPPMNKAMAANLEALGYSPQMQFQF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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