Glyma20g05491 - SoyBase

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Report for Sequence Feature Glyma20g05491

Feature Type:	gene_model
Chromosome:	Gm20
Start:	6322727
stop:	6323437
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g05491

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49700	AT	Annotation by Michelle Graham. TAIR10: Predicted AT-hook DNA-binding family protein \| chr5:20192599-20193429 FORWARD LENGTH=276	SoyBase	E_val: 2.00E-22	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF03479	PFAM	Domain of unknown function (DUF296)	JGI		ISS
UniRef100_B9SY33	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SY33_RICCO	SoyBase	E_val: 8.00E-29	ISS
UniRef100_UPI000233DB4D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DB4D related cluster n=1 Tax=unknown RepID=UPI000233DB4D	SoyBase	E_val: 7.00E-144	ISS

Expression Patterns of Glyma20g05491

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g05491 not represented in the dataset	Glyma20g05491 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g05491 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g039200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g05491

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g05491

Limit To All Plant Sequences

>Glyma20g05491.1   sequence type=CDS   gene model=Glyma20g05491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAACAATTCCATGGCAATCTCCAACTCCCAAAACTCTGTTTCCTTCGACTTAGACTTGACATCCTCCTGGCTCAACCAAACTAGCTCCTGCTCCCAGCGCCCTCGTTGTCCACCATCACCAGCTACAAACCAACCCCTAGAGAATCTCCCTCTTACAAACCCACCCACCAAGAAGCCACGTGGCAGGCCCGCAGGCTCCAAGAACAAGCCCAAGACCACCCCTTTCCTGGTGGCCCAACCTATGGAACCCTACATGAAGGTCATCATTGTCCATGTGACCCCAAGCAGCGATATCATTGAGTCCATTCTTGATGTTGCTCAGCGAGGCCACGTTAGCCTCACTGTCCTTAGTGCCTCTGGAACGATCACCGGAGTAACCCTCAACAACTTTTCGCATGGTGTTGATGCCCTCACACTTCGCGGGCCCTTCACCTTGCTCTCCCTCAATGGCTCATACTTATACAACAACCACTACACCCTTCACCCTGGAGCCACCCCTGCCCCTCCCTTATCCTTTGGGATAAGCTTTTCCACCTCTCAAGGGCAAGTCTTTGGCGGTGCCATTGGCGGTAGAGTCATTGCCGGTAATGATGTCAGCCTTACAATTTGCACCTTCAAGAACCCTGTGATGCATAAGTACGCTTCTAAAGACAAAGAAAGGGACATGGGTGACAATAATAACAACAACAATTATAACAATAACTAA

Predicted protein sequences of Glyma20g05491

Limit To All Plant Sequences

>Glyma20g05491.1   sequence type=predicted peptide   gene model=Glyma20g05491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNNSMAISNSQNSVSFDLDLTSSWLNQTSSCSQRPRCPPSPATNQPLENLPLTNPPTKKPRGRPAGSKNKPKTTPFLVAQPMEPYMKVIIVHVTPSSDIIESILDVAQRGHVSLTVLSASGTITGVTLNNFSHGVDALTLRGPFTLLSLNGSYLYNNHYTLHPGATPAPPLSFGISFSTSQGQVFGGAIGGRVIAGNDVSLTICTFKNPVMHKYASKDKERDMGDNNNNNNYNNN*

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