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Report for Sequence Feature Glyma20g05125

Feature Type:gene_model
Chromosome:Gm20
Start:5825973
stop:5835327
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g05125
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G56030AT Annotation by Michelle Graham. TAIR10: heat shock protein 81-2 | chr5:22686923-22689433 FORWARD LENGTH=728 SoyBaseE_val: 1.00E-59ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009612GO-bp Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009816GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0010187GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of seed germination SoyBaseN/AISS
GO:0010286GO-bp Annotation by Michelle Graham. GO Biological Process: heat acclimation SoyBaseN/AISS
GO:0019722GO-bp Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0050821GO-bp Annotation by Michelle Graham. GO Biological Process: protein stabilization SoyBaseN/AISS
GO:0090332GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal closure SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0051082GO-mf Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding SoyBaseN/AISS
PTHR11528Panther HEAT SHOCK PROTEIN 90 JGI ISS
PTHR11528:SF30Panther SUBFAMILY NOT NAMED JGI ISS
PF02518PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JGI ISS
UniRef100_I1NDR2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NDR2_SOYBN SoyBaseE_val: 2.00E-66ISS
UniRef100_O65069UniRef Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein (Fragment) n=1 Tax=Picea mariana RepID=O65069_PICMA SoyBaseE_val: 5.00E-62ISS

Expression Patterns of Glyma20g05125
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g05125 not represented in the dataset
Glyma20g05125 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g05125 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g037900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g05125
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma20g05125
>Glyma20g05125.2   sequence type=transcript   gene model=Glyma20g05125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGAGCCCAATTGTAAGCAAAACAATCAGTATGTTTACGTTTACGCTCCATCAAACTCCATCGCAGATTCTTCGCTCCTTTCCGTGGATTTAAAACATGGCTACCACCACCACTCCCTGCTAGAGTCTCAATTCTATGATTTCCAAACTTCCATTGCTCCAACTGCCCTTTCAAAGCTTTAGGCGGTAGATTTGCAACTAGGAGAAATTGAGAAAAGCAACAGTCAGCCATTTCGAATATTGACTATTACATGATATAAAGCATGACTTTGGACAAGATTAGATTTAAGAGTTTGACGGACAAGAGCAAGCTCAATGCTCAGCTAGAGTTGTTCATTCATATTATTCCTGAAAAAACTAACAATACACTAACCATTATTGACAGTGGTATTGGCATGACCAAAGCTGATTTGATGAACAACTTGGGTACAATTGTTGGGTCTGGTACCAAGGAATTCATGGAAGCCTTGGTTGTTGGTGTTGATGTTAGTATGATTGCACAGTTTGGTGTGGGGTTCTACTCTGCATATCTTGTTGCCGAAAAGTTCATTGTTACCGCCAAGCACAATGATGATGAGCAGTACGTTTGGGAGTCCTGAGCTGGAGATTCATTCACTGTGACCAGTGATACCTCTGGTGAGGTTCTTGGCAGGGGTATTAAGATCACTCTTTTCCTCAAGGAAGATAAGCTAGAGTACCTTGAGGAGTGTCGATTGAAGGATTTGATTAAGAAGCATTCTGATGGGTTATAAGTATATTTTGGGGATTATTACTTCTAGCTTGGTGCTTGTGTTTGTTATATATGGTTCTGTGTACAAGAAGGCCAAAATGAGATTTAGTATATTAAAATGATGATGTACTTTAAATTAAGGATAAATATAGTTTTATTTTCTTACTTATAGGAATAAAATCAATCTAGAGCACAGTCTCCAACTAATTATTATAAAATTTGCCTTTACATGTGTCCTTCATTATATAAGGATATGAAGTAGCATAGAGGCCATGTGCGATGCTAAGCACTTTCCAAAGACCAGCTGAAAAGAATGGGTCGCTCCATTTTTTACCTTCACCTTATTGTTTCATCTCTTTTTATTTTCCCTTTATTTCTGAATGTTGTCTATGTCAGTAAAAGGTAGGCCGATTATTTTGCTTGTTAATTAGTTTCTCGTTTGTATATTGTT
Coding sequences of Glyma20g05125
>Glyma20g05125.1   sequence type=CDS   gene model=Glyma20g05125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTTGGACAAGATTAGATTTAAGAGTTTGACGGACAAGAGCAAGCTCAATGCTCAGCTAGAGTTGTTCATTCATATTATTCCTGAAAAAACTAACAATACACTAACCATTATTGACAGTGGTATTGGCATGACCAAAGCTGATTTGATGAACAACTTGGGTACAATTGTTGGGTCTGGTACCAAGGAATTCATGGAAGCCTTGGTTGTTGGTGTTGATGTTAGTATGATTGCACAGTTTGGTGTGGGGTTCTACTCTGCATATCTTGTTGCCGAAAAGTTCATTGTTACCGCCAAGCACAATGATGATGAGCAGTACGTTTGGGAGTCCTGA

>Glyma20g05125.2   sequence type=CDS   gene model=Glyma20g05125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTTGGACAAGATTAGATTTAAGAGTTTGACGGACAAGAGCAAGCTCAATGCTCAGCTAGAGTTGTTCATTCATATTATTCCTGAAAAAACTAACAATACACTAACCATTATTGACAGTGGTATTGGCATGACCAAAGCTGATTTGATGAACAACTTGGGTACAATTGTTGGGTCTGGTACCAAGGAATTCATGGAAGCCTTGGTTGTTGGTGTTGATGTTAGTATGATTGCACAGTTTGGTGTGGGGTTCTACTCTGCATATCTTGTTGCCGAAAAGTTCATTGTTACCGCCAAGCACAATGATGATGAGCAGTACGTTTGGGAGTCCTGA
Predicted protein sequences of Glyma20g05125
>Glyma20g05125.1   sequence type=predicted peptide   gene model=Glyma20g05125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLDKIRFKSLTDKSKLNAQLELFIHIIPEKTNNTLTIIDSGIGMTKADLMNNLGTIVGSGTKEFMEALVVGVDVSMIAQFGVGFYSAYLVAEKFIVTAKHNDDEQYVWES*

>Glyma20g05125.2   sequence type=predicted peptide   gene model=Glyma20g05125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLDKIRFKSLTDKSKLNAQLELFIHIIPEKTNNTLTIIDSGIGMTKADLMNNLGTIVGSGTKEFMEALVVGVDVSMIAQFGVGFYSAYLVAEKFIVTAKHNDDEQYVWES*






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