Report for Sequence Feature Glyma20g05080
Feature Type: gene_model
Chromosome: Gm20
Start: 5806852
stop: 5809217
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g05080
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G12300 AT
Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:3978508-3979632 REVERSE LENGTH=374
SoyBase E_val: 9.00E-77 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_D7M4I2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: C2 domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M4I2_ARALL
SoyBase E_val: 5.00E-74 ISS
UniRef100_UPI0002338A8A UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338A8A related cluster n=1 Tax=unknown RepID=UPI0002338A8A
SoyBase E_val: 0 ISS
Expression Patterns of Glyma20g05080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma20g05080
Paralog Evidence Comments
Glyma07g35800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma20g05080 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g037600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g05080
Coding sequences of Glyma20g05080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g05080.2 sequence type=CDS gene model=Glyma20g05080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTCATTCAATCAGAGTCATCAAACTACCAGCTTCAGGAACATTCATAACATATGCATCTATGATAATCAGGATGTGTATGCTAAGTTCTCTCTTACATACAACCCTGATGAGACTCTCTCCACCAGAATCATAAATGGAGGTGGAAAACACCCAATATTCAATGAAAACTTGAAGATGAAGATAACCCAGATGGATGCTGTTCTCAAGTGTGAGATTTGGATGTTCAGTAGGTCAAGAAATCACTTGGAAGACCAGCTTTTGGGATTTGCTTTGGTCCAAATTTCACAAGTTGTTGGCAAAGGAAAGGTGACAGAAGATTATAGCCTTTCCTCCACTGATCTTTTCCATTGTCCTGCTGGAACTGTCCAATTAACACTTTCTTTGGACACATCATTCTCAATCAGTTCCACTGTGAATCCCATATCACAATCAGTTACTAATTCATCCATATCTTCAGAAGTTGTTTTGCTTGATCCAAAAGTTTCACAAGATATGTCAGACCCAGTTGAGTATTCTAGAATTGAATTTCCTGATGTTAGTGTGATGAAGGAGAACCAGAAAATGGTTTCTGAGTACTTCAATTTGGAATCTTATGGTTCTTATGCTTCAAGGCCTAATTACTCAGTGGGATTGCTACCATTTCTTCACCTCGGTGCTTCTCCTCAAGGTGATGATTATGAAATGACTGTGACTGCACCAGATGAGAATCATGAGTCCACTTCTCCAAATGAGACCATTCGGAATCCTGTGTTCCCTACCTCTACTACTACAAGCTTAAGTGATGAAAGAAACTCAGGTGATTCAGTTGAGGAAAAGAATAATTTGAGGGGTGACTCATCAAATTCTTTCAATGTTTCAATCACAGTTGAAGGTTGTCAGAATTCTGGTGGCAGTCCAGAAACCCCAACTTCCAAGAAAGAAAGTGGAGCTAGAGATGACAAGGAGTCAAAGTTCTCGTCAAGCAAGGAAAAGGAGATCAATAGTGATAGGAATACAGAAGCTACAAGATTTGGTCAAGTTTTTTCTGCTTCACTAGGGAACATCAACATGGAGGCTGAGCAATCAGCTATGCAGCAGCAAATAGTTACCATGTACATGAGAAGCATGCAACAATTCACTGAGTCTTTGGCAAAAATGAAGCTTCCAATGGACCTTGACAAACCTGAAAGTGAAGGTCAACTTGGTGTGATTCAAAATCCTAATAGCAGTAAGTTAGAAACTGATAAGAAAAAGGATGGATCACGTGTGTTTTACGGTAGCCGAGCATTCTTCTAG
Predicted protein sequences of Glyma20g05080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g05080.2 sequence type=predicted peptide gene model=Glyma20g05080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDSFNQSHQTTSFRNIHNICIYDNQDVYAKFSLTYNPDETLSTRIINGGGKHPIFNENLKMKITQMDAVLKCEIWMFSRSRNHLEDQLLGFALVQISQVVGKGKVTEDYSLSSTDLFHCPAGTVQLTLSLDTSFSISSTVNPISQSVTNSSISSEVVLLDPKVSQDMSDPVEYSRIEFPDVSVMKENQKMVSEYFNLESYGSYASRPNYSVGLLPFLHLGASPQGDDYEMTVTAPDENHESTSPNETIRNPVFPTSTTTSLSDERNSGDSVEEKNNLRGDSSNSFNVSITVEGCQNSGGSPETPTSKKESGARDDKESKFSSSKEKEINSDRNTEATRFGQVFSASLGNINMEAEQSAMQQQIVTMYMRSMQQFTESLAKMKLPMDLDKPESEGQLGVIQNPNSSKLETDKKKDGSRVFYGSRAFF*