Glyma20g05015 - SoyBase

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Report for Sequence Feature Glyma20g05015

Feature Type:	gene_model
Chromosome:	Gm20
Start:	5547561
stop:	5551335
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g05015

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G12330	AT	Annotation by Michelle Graham. TAIR10: Lateral root primordium (LRP) protein-related \| chr5:3987677-3989074 REVERSE LENGTH=320	SoyBase	E_val: 9.00E-80	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
PF05142	PFAM	Domain of unknown function (DUF702)	JGI		ISS
UniRef100_B9SY29	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SY29_RICCO	SoyBase	E_val: 6.00E-90	ISS
UniRef100_I1NDQ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NDQ8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g05015

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g05015 not represented in the dataset	Glyma20g05015 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g05015

Paralog	Evidence	Comments
Glyma07g35780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g05015 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g037100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g05015

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g05015

Limit To All Plant Sequences

>Glyma20g05015.2   sequence type=transcript   gene model=Glyma20g05015   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAACCAAAAACCTTTTTTTCAGTCAGAGACAATCATAACCACCTTATTTTATCTGGTTCGAGCAAGGTTGTCTTCTAAAACCTAGGTCTTCAGTTGTGGCTACCACAAGGCGGTTCCCTTCAGATTCCGGTGCCTTTGCAGACTGGTCGGCCCCTCCGTCTGCCATCTCCGGCCGCGGTGACGACCTCTCCCTCGGCTTCAATGCTTCATCCGCCGCCACTGCGCACGGCGGCGGAGCCATGTGGCCGGGGGTATCGAGGTCGTTCAACTACAACCTGGCGCCTCACCATGACATCTTCGTGGTGGCGCCTGCTTCCTCCTTCTACCACCACCACAACGACGTCGTCTTATCCGATCCAAACAACAACAACGGTTCCAACAATTCCAACAACCCTGCAACGGCACACGGAGTCAACGTTTTCCCTCTCCTAACCGCCACGCCATGCCTCGAGAGCGAGGGCATAATGGGAAACATCAGTCACCACCGTAACAGAATTCAGTTATGGCAGGAGCACGAGTCTTCTCCGCCGCAGCAGCAACAGGGTCACATGGAGCGTGACACGTGTGGGGATGGGGGCGGGACTAGCACGTGCCAGGACTGTGGGAACCAGGCGAAGAAGGATTGTAGTCACAGGAGGTGCAGGACGTGTTGCAAGAGTAGGGGTTTTGATTGCTCCACGCACGTGAAGAGCACGTGGGTGCCGGCGTCACGGCGGAGGGAGAGGCAGCTCAAGGGGGTGGCGGCGGCCGGTGCGGCGGTTGGGTCCAATGGGGCCACTTCCGGTGCCAAGAAACCTAGGCTTGTTGCTTCTCAAACTACTTCGCATACTTCAACGTCTAATAATACCACTCCTCCGAGGAGTTTTGACACTGGTTGTAGCCCCCAAGATGTGGGTTTCAAGGAGTCACTACCAAGTCAAGTGCGTGCACCAGCAGTGTTCAAGTGTGTTCGTGTAACATCAGTGGATGATGGTGGGGAAGATGAGTATGCGTATCAAGCAGTTGTGAAGATTGGTGGCCATGTCTTCAAAGGGTTTCTCTATGATCAAGGGGTTGAGGACAAAGAAGGGTACCCTAATTTATCTGAATTACATTTGAGTGGTGGTGGTGGTGGAAATGTTACAAGTGGAAGTGATGGTGGTAGAAATGGAATTTCATCTTCATCTCCAATGGTGGATCGTTCTCATGATGTCTATGCAGCTTCAGGTGGAGGGTTGCTACTTGGAGGTTCATCAAACTATGGTAATCATCCAATAAATTAAAAATCATTTTTTCCAAGTGTAACGTAGATGATGATGGATGGGCTTGGAAAGCTTGACTTATTATTGTAGGGTAACTTTTCTTATTTTTCCAACATTGGGGGTGGGTTGGAGGGTATAGATTAATTAATATTAATATTCTTCTAAGTTTGTATCTTATTATAACCATATGTCACTCTGCATTTTTCAACTCCTCGGTTTTTGTTCCTTTTAGTCCATTTTTTCTTTCTTTGTTGACTCACTTGCATGACTAGATCGGTGGATTACAGAGGAGCCAAATCATGTCAAGAGAATAGTTTATGTGTACCAAATTAATTACTATCTGAGAATTGAAAAACAAATCTGAAAAGAATCTTGCT

Coding sequences of Glyma20g05015

Limit To All Plant Sequences

>Glyma20g05015.1   sequence type=CDS   gene model=Glyma20g05015   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCCGGGGGTATCGAGGTCGTTCAACTACAACCTGGCGCCTCACCATGACATCTTCGTGGTGGCGCCTGCTTCCTCCTTCTACCACCACCACAACGACGTCGTCTTATCCGATCCAAACAACAACAACGGTTCCAACAATTCCAACAACCCTGCAACGGCACACGGAGTCAACGTTTTCCCTCTCCTAACCGCCACGCCATGCCTCGAGAGCGAGGGCATAATGGGAAACATCAGTCACCACCGTAACAGAATTCAGTTATGGCAGGAGCACGAGTCTTCTCCGCCGCAGCAGCAACAGGGTCACATGGAGCGTGACACGTGTGGGGATGGGGGCGGGACTAGCACGTGCCAGGACTGTGGGAACCAGGCGAAGAAGGATTGTAGTCACAGGAGGTGCAGGACGTGTTGCAAGAGTAGGGGTTTTGATTGCTCCACGCACGTGAAGAGCACGTGGGTGCCGGCGTCACGGCGGAGGGAGAGGCAGCTCAAGGGGGTGGCGGCGGCCGGTGCGGCGGTTGGGTCCAATGGGGCCACTTCCGGTGCCAAGAAACCTAGGCTTGTTGCTTCTCAAACTACTTCGCATACTTCAACGTCTAATAATACCACTCCTCCGAGGAGTTTTGACACTGGTTGTAGCCCCCAAGATGTGGGTTTCAAGGAGTCACTACCAAGTCAAGTGCGTGCACCAGCAGTGTTCAAGTGTGTTCGTGTAACATCAGTGGATGATGGTGGGGAAGATGAGTATGCGTATCAAGCAGTTGTGAAGATTGGTGGCCATGTCTTCAAAGGGTTTCTCTATGATCAAGGGGTTGAGGACAAAGAAGGGTACCCTAATTTATCTGAATTACATTTGAGTGGTGGTGGTGGTGGAAATGTTACAAGTGGAAGTGATGGTGGTAGAAATGGAATTTCATCTTCATCTCCAATGGTGGATCGTTCTCATGATGTCTATGCAGCTTCAGGTGGAGGGTTGCTACTTGGAGGTTCATCAAACTATGGTAATCATCCAATAAATTAA

>Glyma20g05015.2   sequence type=CDS   gene model=Glyma20g05015   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCCGGGGGTATCGAGGTCGTTCAACTACAACCTGGCGCCTCACCATGACATCTTCGTGGTGGCGCCTGCTTCCTCCTTCTACCACCACCACAACGACGTCGTCTTATCCGATCCAAACAACAACAACGGTTCCAACAATTCCAACAACCCTGCAACGGCACACGGAGTCAACGTTTTCCCTCTCCTAACCGCCACGCCATGCCTCGAGAGCGAGGGCATAATGGGAAACATCAGTCACCACCGTAACAGAATTCAGTTATGGCAGGAGCACGAGTCTTCTCCGCCGCAGCAGCAACAGGGTCACATGGAGCGTGACACGTGTGGGGATGGGGGCGGGACTAGCACGTGCCAGGACTGTGGGAACCAGGCGAAGAAGGATTGTAGTCACAGGAGGTGCAGGACGTGTTGCAAGAGTAGGGGTTTTGATTGCTCCACGCACGTGAAGAGCACGTGGGTGCCGGCGTCACGGCGGAGGGAGAGGCAGCTCAAGGGGGTGGCGGCGGCCGGTGCGGCGGTTGGGTCCAATGGGGCCACTTCCGGTGCCAAGAAACCTAGGCTTGTTGCTTCTCAAACTACTTCGCATACTTCAACGTCTAATAATACCACTCCTCCGAGGAGTTTTGACACTGGTTGTAGCCCCCAAGATGTGGGTTTCAAGGAGTCACTACCAAGTCAAGTGCGTGCACCAGCAGTGTTCAAGTGTGTTCGTGTAACATCAGTGGATGATGGTGGGGAAGATGAGTATGCGTATCAAGCAGTTGTGAAGATTGGTGGCCATGTCTTCAAAGGGTTTCTCTATGATCAAGGGGTTGAGGACAAAGAAGGGTACCCTAATTTATCTGAATTACATTTGAGTGGTGGTGGTGGTGGAAATGTTACAAGTGGAAGTGATGGTGGTAGAAATGGAATTTCATCTTCATCTCCAATGGTGGATCGTTCTCATGATGTCTATGCAGCTTCAGGTGGAGGGTTGCTACTTGGAGGTTCATCAAACTATGGTAATCATCCAATAAATTAA

Predicted protein sequences of Glyma20g05015

Limit To All Plant Sequences

>Glyma20g05015.1   sequence type=predicted peptide   gene model=Glyma20g05015   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWPGVSRSFNYNLAPHHDIFVVAPASSFYHHHNDVVLSDPNNNNGSNNSNNPATAHGVNVFPLLTATPCLESEGIMGNISHHRNRIQLWQEHESSPPQQQQGHMERDTCGDGGGTSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVPASRRRERQLKGVAAAGAAVGSNGATSGAKKPRLVASQTTSHTSTSNNTTPPRSFDTGCSPQDVGFKESLPSQVRAPAVFKCVRVTSVDDGGEDEYAYQAVVKIGGHVFKGFLYDQGVEDKEGYPNLSELHLSGGGGGNVTSGSDGGRNGISSSSPMVDRSHDVYAASGGGLLLGGSSNYGNHPIN*

>Glyma20g05015.2   sequence type=predicted peptide   gene model=Glyma20g05015   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWPGVSRSFNYNLAPHHDIFVVAPASSFYHHHNDVVLSDPNNNNGSNNSNNPATAHGVNVFPLLTATPCLESEGIMGNISHHRNRIQLWQEHESSPPQQQQGHMERDTCGDGGGTSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVPASRRRERQLKGVAAAGAAVGSNGATSGAKKPRLVASQTTSHTSTSNNTTPPRSFDTGCSPQDVGFKESLPSQVRAPAVFKCVRVTSVDDGGEDEYAYQAVVKIGGHVFKGFLYDQGVEDKEGYPNLSELHLSGGGGGNVTSGSDGGRNGISSSSPMVDRSHDVYAASGGGLLLGGSSNYGNHPIN*

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