SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G14220 | AT | Annotation by Michelle Graham. TAIR10: Ribonuclease T2 family protein | chr1:4858642-4859601 REVERSE LENGTH=228 | SoyBase | E_val: 1.00E-81 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0004521 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endoribonuclease activity | SoyBase | N/A | ISS |
| GO:0033897 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribonuclease T2 activity | SoyBase | N/A | ISS |
| KOG1642 | KOG | Ribonuclease, T2 family | JGI | ISS | |
| PTHR11240 | Panther | RIBONUCLEASE T2 | JGI | ISS | |
| PF00445 | PFAM | Ribonuclease T2 family | JGI | ISS | |
| UniRef100_B9S8X3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribonuclease t2, putative n=1 Tax=Ricinus communis RepID=B9S8X3_RICCO | SoyBase | E_val: 4.00E-83 | ISS |
| UniRef100_C6T3S4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T3S4_SOYBN | SoyBase | E_val: 3.00E-175 | ISS |
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Glyma20g04830 not represented in the dataset |
Glyma20g04830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g036200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g04830.1 sequence type=CDS gene model=Glyma20g04830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAAGTATCAGCACAATTGCCATCAAGCTTTTGATGCTACTATCTTTTGGCAACATTTGGATTTCACGGGATTTTGATTTTTTTTACTTCGTACAACAGTGGCCAGGTTCATTCTGTGACACAAAAAAAAGTTGCTGCTTTCCTCTAACAGGGAAACCAGTATCAAACTTCAGCATTCATGGATTGTGGCCTAATTTCAGCAATGGATCATTTCCATCCAATTGCAATATTGCTGAAAATCCATTTAACCAATCTAAGATCACTGACCTGATTCCAAGAGCTGAAAAAGGCTGGGCATCACTCTCTTGTGCAGGCAGCAAAAAGACAGAGAACAACAAAACAAGCAGTGATAATACAAGGTTCTGGAAACATGAATGGGACAAACATGGCACTTGCTCTGACTTAATCCTTGATCAACATGCATATTTTGAAGCTACTTTGAACCTCAAGGACCGTGTAGACCTCCTTCAAATCCTTCAATATAATGGAATCAAACCAGATGGAAACCTTTACAGCATTGTCAACATAACAAAAGCAATAACACAAGCAATTGGGTTAGAACCTGGCATAACATGCAACACTGATCCATCTGGTAATCGCCAGCTTAATGAGATATATCTTTGTGCCGATAAATATGCCTCCAGCTTCATTGAATGTCCAATACTACCAAGTAGAAAAAGTTGTACAGACATGGTGGAGTTTCCCATCTTCTAG
>Glyma20g04830.1 sequence type=predicted peptide gene model=Glyma20g04830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MISISTIAIKLLMLLSFGNIWISRDFDFFYFVQQWPGSFCDTKKSCCFPLTGKPVSNFSIHGLWPNFSNGSFPSNCNIAENPFNQSKITDLIPRAEKGWASLSCAGSKKTENNKTSSDNTRFWKHEWDKHGTCSDLILDQHAYFEATLNLKDRVDLLQILQYNGIKPDGNLYSIVNITKAITQAIGLEPGITCNTDPSGNRQLNEIYLCADKYASSFIECPILPSRKSCTDMVEFPIF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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