SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma20g04593): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma20g04593): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma20g04593

Feature Type:gene_model
Chromosome:Gm20
Start:4804693
stop:4805554
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g04593
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G21950AT Annotation by Michelle Graham. TAIR10: SKP1 interacting partner 6 | chr2:9353526-9354644 REVERSE LENGTH=372 SoyBaseE_val: 5.00E-33ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
PTHR13690Panther KELCH-RELATED JGI ISS
PTHR13690:SF90Panther KELCH-RELATED JGI ISS
UniRef100_G7JAA2UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein SKIP6 n=1 Tax=Medicago truncatula RepID=G7JAA2_MEDTR SoyBaseE_val: 1.00E-37ISS
UniRef100_UPI000233DAF7UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DAF7 related cluster n=1 Tax=unknown RepID=UPI000233DAF7 SoyBaseE_val: 7.00E-76ISS

Expression Patterns of Glyma20g04593
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g04593 not represented in the dataset
Glyma20g04593 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g04593 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g035100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g04593
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma20g04593
>Glyma20g04593.2   sequence type=transcript   gene model=Glyma20g04593   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCGTTGGCTGCGAATTCGCCGCTGCGGGAGTCCTCCATGACAAGATCTATGTCTTCGGTGGCTGCGTCGCTGACACCTGGGTAGAATTGGATCAAGGGTGGAAGGGGAGGGCGTGCATGGTGGAAGGGATTTTGTACTGCTATGATTATTTGGGGAAAATCAAAGGGTTCAATGTGGGGCGCGAGGTGTGGGAGGAGTTGAAGGGGTTGGAGAAGGGTTTGCCCAGGTTTCTGTGTGGGGCTACGATGACTGATTTGGGTGGGAAATTGTGTGTGTGCACTGAGATTGGAGTGAAGAAGAATTCGGATGGGGAATTGTGGGGTCAACTTGGTTGGTTCGGGAAGGTTCTTTCTATTCCCAAAGGCTCTTCCATTGTCAACTGTTCTTCTGTTTCCTTGTGACCATACATTACATGTAAGCATTCTTTGATTTTACTACATTGAATTGCTGCCACTTGCTCTTAGGCGCCATTTCCTGCTCAGATGTTTGTATGTCAAATTGTGAATGATAAATAAACAGGAGCTCCTCAACTAGTACTGCGCTTTGAAGTGAATCAAGTCATGTGTTAATGGAATGAAAGTTTGTGTATGTGTGTCTCTGCGACCTTGAATTTCAGTTACTGGATGATCTGAGTAAGCAATACTTTTGTTCTT
Coding sequences of Glyma20g04593
>Glyma20g04593.1   sequence type=CDS   gene model=Glyma20g04593   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCGTTGGCTGCGAATTCGCCGCTGCGGGAGTCCTCCATGACAAGATCTATGTCTTCGGTGGCTGCGTCGCTGACACCTGGGTAGAATTGGATCAAGGGTGGAAGGGGAGGGCGTGCATGGTGGAAGGGATTTTGTACTGCTATGATTATTTGGGGAAAATCAAAGGGTTCAATGTGGGGCGCGAGGTGTGGGAGGAGTTGAAGGGGTTGGAGAAGGGTTTGCCCAGGTTTCTGTGTGGGGCTACGATGACTGATTTGGGTGGGAAATTGTGTGTGTGCACTGAGATTGGAGTGAAGAAGAATTCGGATGGGGAATTGTGGGGTCAACTTGGTTGGTTCGGGAAGGTTCTTTCTATTCCCAAAGGCTCTTCCATTGTCAACTGTTCTTCTGTTTCCTTGTGA

>Glyma20g04593.2   sequence type=CDS   gene model=Glyma20g04593   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCGTTGGCTGCGAATTCGCCGCTGCGGGAGTCCTCCATGACAAGATCTATGTCTTCGGTGGCTGCGTCGCTGACACCTGGGTAGAATTGGATCAAGGGTGGAAGGGGAGGGCGTGCATGGTGGAAGGGATTTTGTACTGCTATGATTATTTGGGGAAAATCAAAGGGTTCAATGTGGGGCGCGAGGTGTGGGAGGAGTTGAAGGGGTTGGAGAAGGGTTTGCCCAGGTTTCTGTGTGGGGCTACGATGACTGATTTGGGTGGGAAATTGTGTGTGTGCACTGAGATTGGAGTGAAGAAGAATTCGGATGGGGAATTGTGGGGTCAACTTGGTTGGTTCGGGAAGGTTCTTTCTATTCCCAAAGGCTCTTCCATTGTCAACTGTTCTTCTGTTTCCTTGTGA
Predicted protein sequences of Glyma20g04593
>Glyma20g04593.1   sequence type=predicted peptide   gene model=Glyma20g04593   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRVGCEFAAAGVLHDKIYVFGGCVADTWVELDQGWKGRACMVEGILYCYDYLGKIKGFNVGREVWEELKGLEKGLPRFLCGATMTDLGGKLCVCTEIGVKKNSDGELWGQLGWFGKVLSIPKGSSIVNCSSVSL*

>Glyma20g04593.2   sequence type=predicted peptide   gene model=Glyma20g04593   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRVGCEFAAAGVLHDKIYVFGGCVADTWVELDQGWKGRACMVEGILYCYDYLGKIKGFNVGREVWEELKGLEKGLPRFLCGATMTDLGGKLCVCTEIGVKKNSDGELWGQLGWFGKVLSIPKGSSIVNCSSVSL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo