SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G05840 | AT | Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein | chr1:1762843-1766150 REVERSE LENGTH=485 | SoyBase | E_val: 6.00E-22 | ISS |
| GO:0000303 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to superoxide | SoyBase | N/A | ISS |
| GO:0006301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: postreplication repair | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0006869 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid transport | SoyBase | N/A | ISS |
| GO:0006891 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0008219 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell death | SoyBase | N/A | ISS |
| GO:0009755 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009873 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lithium ion transport | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0044265 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular macromolecule catabolic process | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| GO:0004190 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity | SoyBase | N/A | ISS |
| PTHR23076 | Panther | METALLOPROTEASE M41 FTSH | JGI | ISS | |
| PTHR23076:SF6 | Panther | FTSH HOMOLOG | JGI | ISS | |
| PF01434 | PFAM | Peptidase family M41 | JGI | ISS | |
| UniRef100_B9RPK3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aspartic proteinase nepenthesin-1, putative n=1 Tax=Ricinus communis RepID=B9RPK3_RICCO | SoyBase | E_val: 1.00E-21 | ISS |
| UniRef100_UPI000233D874 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D874 related cluster n=1 Tax=unknown RepID=UPI000233D874 | SoyBase | E_val: 2.00E-33 | ISS |
|
Glyma20g04586 not represented in the dataset |
Glyma20g04586 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g035000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g04586.1 sequence type=CDS gene model=Glyma20g04586 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGTCGTCTTCGAATTCCCAAAACCCCGCCGCCGCCGCCGCAGCATCGTCGGAGGCCCAAGTCAGCAAAAAGGCCGCCAAGAAGGAGGCCGCCAAACTAGGGAAGCTCCTCCGACACTCTCTCCCGGTGGCTCCGCCATTCTCAGAGCGGCCTTCGACCGATATAGAGGGATCGTGTTCAAGAACATCCCTGGTGTCGTGCTCAAAGCCCCCTCTTTCTTGTCTTTTTGTTTTGCTGCTACCACTACTGTGCTACCGATCTCCGGTCACCAACAGATGTGGTGCTGTACAATCTGTGACATTGAGTTCATCTTCTGAAGAAGCCCTTGATGGAATAATTGGTTTTGGGCAATCAAATTTTTCTATGCTTTCACAGCTTTCTGCATCTAGAAAGGTGAAAAAAGTATTTTCACATTGCCTTGACAATATTCGTGGTGGTGGAATATTTGCCATAGGGGAAGTGGTGGAACTAAAAGTCAGCAACTCCGTTGGTACCAAGATTTTTGCCTTAGAAAAGAAGACTGCGAAGTTGAGAGGAATTGAGAAGGCTCTAGTTGCACGGCATGAAGCTGGTCATGCTGTAGTAGGTACTGCAGTAGCAAACATTCTTGCTGGACAGCCACGTGTTGAGGTAAACCATGGAAAATGCTCTATTTTTCGCCATTTAAATATTTCAATGCCATTGCAGATATGTAGATGA
>Glyma20g04586.1 sequence type=predicted peptide gene model=Glyma20g04586 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMSSSNSQNPAAAAAASSEAQVSKKAAKKEAAKLGKLLRHSLPVAPPFSERPSTDIEGSCSRTSLVSCSKPPLSCLFVLLLPLLCYRSPVTNRCGAVQSVTLSSSSEEALDGIIGFGQSNFSMLSQLSASRKVKKVFSHCLDNIRGGGIFAIGEVVELKVSNSVGTKIFALEKKTAKLRGIEKALVARHEAGHAVVGTAVANILAGQPRVEVNHGKCSIFRHLNISMPLQICR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
