SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| KOG0851 | KOG | Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins | JGI | ISS | |
| PF02721 | PFAM | Domain of unknown function DUF223 | JGI | ISS | |
| UniRef100_G7J1G0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Replication factor-a protein 1 (Rpa1) family protein n=1 Tax=Medicago truncatula RepID=G7J1G0_MEDTR | SoyBase | E_val: 2.00E-35 | ISS |
| UniRef100_UPI000233D612 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D612 related cluster n=1 Tax=unknown RepID=UPI000233D612 | SoyBase | E_val: 2.00E-92 | ISS |
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Glyma20g04566 not represented in the dataset |
Glyma20g04566 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g04566.1 sequence type=CDS gene model=Glyma20g04566 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACGTACTCCTGACAAGATTAAGTCTATTGACGGGTCAAGAGAAACCCTTAAACTTGCTGTAAGGATCACAGATCTTTGGTTCGTTGGGACTCCCAACAAGTCTGAGCAAGCTGAAATTGTTATTGTAGATTCTGATGGAGATGAAATCTATGTTGTTTGTAAGGCAGACCAGCTAAAGTCTTGGAAAGCTGATTTGAAGGAAAATTCCACTTATGTCATGCATAATTTTAAAGTGATGAAGAATGATGGTCAATTCAGAGTCTGTGAGCATCAATATAAATTAGTTTTTATTGGAGTTACTGTTGTTGGGCAATCCAATTTAGATGACCTTCCTTTTAAGGAATTTAGATTTGTTGAATTTTCCAATATCATTTATGGCAATTTCGAGGCTGGCCTGTTGGTTGGATTTGAGGTTATGTTGTACAACAATCTTTTCTCCCCCCTATATATTTGTGGCCAAGTGTTATCTTGCACTATTTGGGAAAATTACTATTTACAGTTCTTAGCCTACTTGAATGAGATTGAAAATGATGGCCCGATGGTTATCATTTTGACACATGCCAGAATCAAAGAAGGGCAGGGATCCTATCCACCTTCAGTGAGTAATTTGTTGAAGGCCTCACAATTATTGATTAATGAACCTGTATTGGAAATCCAAGAATTCAGGGAG
>Glyma20g04566.1 sequence type=predicted peptide gene model=Glyma20g04566 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARTPDKIKSIDGSRETLKLAVRITDLWFVGTPNKSEQAEIVIVDSDGDEIYVVCKADQLKSWKADLKENSTYVMHNFKVMKNDGQFRVCEHQYKLVFIGVTVVGQSNLDDLPFKEFRFVEFSNIIYGNFEAGLLVGFEVMLYNNLFSPLYICGQVLSCTIWENYYLQFLAYLNEIENDGPMVIILTHARIKEGQGSYPPSVSNLLKASQLLINEPVLEIQEFRE
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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