Glyma20g04500 - SoyBase

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Report for Sequence Feature Glyma20g04500

Feature Type:	gene_model
Chromosome:	Gm20
Start:	4673048
stop:	4679272
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g04500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G03060	AT	Annotation by Michelle Graham. TAIR10: AGAMOUS-like 30 \| chr2:901614-903569 FORWARD LENGTH=386	SoyBase	E_val: 1.00E-102	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0010584	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen exine formation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
KOG0014	KOG	MADS box transcription factor	JGI		ISS
PTHR11945	Panther	MADS BOX PROTEIN	JGI		ISS
PTHR11945:SF60	Panther	AGL30	JGI		ISS
PF00319	PFAM	SRF-type transcription factor (DNA-binding and dimerisation domain)	JGI		ISS
UniRef100_G7KGN7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MADS-box transcription factor n=1 Tax=Medicago truncatula RepID=G7KGN7_MEDTR	SoyBase	E_val: 2.00E-166	ISS
UniRef100_I1NDP3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NDP3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g04500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g04500

Paralog	Evidence	Comments
Glyma07g35610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g04500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g034000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g04500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g04500

Limit To All Plant Sequences

>Glyma20g04500.2   sequence type=transcript   gene model=Glyma20g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTAACTATGCATGTATATGTAATGTGTAGGATGGGCAGGGTAAAGCTAAAGATAAAGAGGTTGGAGAACACCAATGGCCGCCCAGCAACATATGCCAAAAGAAGAAATGGAATTATGAAAAAAGCTGCTGAGTTATCTATACTATGTGATATAGATATTATACTCCTCATGTTCGCACCAAATGGAAAGCCATCATTATGTAGGGGGAGGTGCAGTAACTTTGAGGAAGTTATTACGAAATTTGGTCAACTAACTCCCCAGGAAAGGACAAAAAGGAAATTAGAGACTCTTGAGGCATTGAAGAAAACGTTTAAGAAGTTAGATCATGATGTAAATGTACAAGAATTTTTTGGTACAAGTAGTCAAACTATTGAGGATTTGAGTAATCAAGCCAAGCTATTACAAACTCAAATTTTTGGAACTCATAAGAGATTAAGTGTGGATCAACTAGGACGGATGGAAAATTCGCTCAGGGAGTCACTTGATCAAATTCGAACCCATAAGGAAAATGTAAAAAAGCAACAACAACTTGTTTCACTGCAATGCAATAACCAGTTGAATGAGATGAATATTCCCTTCAGAATGACTGCACAACAACTCCAACCTCTATCATGGATTGTCAATGACAACGACCAAAATATAGTTTTACCTGAAGACTCAAACATGTTTCTCCACAAAGATGTAGAGGGATCTGTAAGTTCATCTTTTGGGAGTTATGACAATTATTTTGGCTCAAGTATCAAAACTGATATGTCAAGCTCAACACAAGAAAATGGGGTCCTTAGTGACATGAGCAATATTGCCCCTATGAGACTCCAATTGAATGGGCAGTTTCCATGTCTTCAATACAATTTTAATTTACTAAACAATTTGAAGTTTCAACCAAGTGTAGAGATTAACCCACATGAAAATCATGTAGATTATCATGTGAATGAAGGCTTTGAAGCACCTAGATCGAGTTATGATTCTAACAATCACCATGGTTGGGCTTCCACATCAGGGTCTTGTGGTATTACTATGTTTGAAGAGCAATTATATGCCCAGGCAAGCTTCACTAAAGTGAACATTGACTTCACATAA

Coding sequences of Glyma20g04500

Limit To All Plant Sequences

>Glyma20g04500.1   sequence type=CDS   gene model=Glyma20g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGTATATGTAATGTGTAGGATGGGCAGGGTAAAGCTAAAGATAAAGAGGTTGGAGAACACCAATGGCCGCCCAGCAACATATGCCAAAAGAAGAAATGGAATTATGAAAAAAGCTGCTGAGTTATCTATACTATGTGATATAGATATTATACTCCTCATGTTCGCACCAAATGGAAAGCCATCATTATGTAGGGGGAGGTGCAGTAACTTTGAGGAAGTTATTACGAAATTTGGTCAACTAACTCCCCAGGAAAGGACAAAAAGGAAATTAGAGACTCTTGAGGCATTGAAGAAAACGTTTAAGAAGTTAGATCATGATGTAAATGTACAAGAATTTTTTGGTACAAGTAGTCAAACTATTGAGGATTTGAGTAATCAAGCCAAGCTATTACAAACTCAAATTTTTGGAACTCATAAGAGATTAAGTCATTGGACAGAATTTGATAAAATAAACAGTGTGGATCAACTAGGACGGATGGAAAATTCGCTCAGGGAGTCACTTGATCAAATTCGAACCCATAAGGAAAATGTAAAAAAGCAACAACAACTTGTTTCACTGCAATGCAATAACCAGTTGAATGAGATGAATATTCCCTTCAGAATGACTGCACAACAACTCCAACCTCTATCATGGATTGTCAATGACAACGACCAAAATATAGTTTTACCTGAAGACTCAAACATGTTTCTCCACAAAGATGTAGAGGGATCTGTAAGTTCATCTTTTGGGAGTTATGACAATTATTTTGGCTCAAGTATCAAAACTGATATGTCAAGCTCAACACAAGAAAATGGGGTCCTTAGTGACATGAGCAATATTGCCCCTATGAGACTCCAATTGAATGGGCAGTTTCCATGTCTTCAATACAATTTTAATTTACTAAACAATTTGAAGTTTCAACCAAGTGTAGAGATTAACCCACATGAAAATCATGTAGATTATCATGTGAATGAAGGCTTTGAAGCACCTAGATCGAGTTATGATTCTAACAATCACCATGGTTGGGCTTCCACATCAGGGTCTTGTGGTATTACTATGTTTGAAGAGCAATTATATGCCCAGGCAAGCTTCACTAAAGTGAACATTGACTTCACATAA

>Glyma20g04500.2   sequence type=CDS   gene model=Glyma20g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGTATATGTAATGTGTAGGATGGGCAGGGTAAAGCTAAAGATAAAGAGGTTGGAGAACACCAATGGCCGCCCAGCAACATATGCCAAAAGAAGAAATGGAATTATGAAAAAAGCTGCTGAGTTATCTATACTATGTGATATAGATATTATACTCCTCATGTTCGCACCAAATGGAAAGCCATCATTATGTAGGGGGAGGTGCAGTAACTTTGAGGAAGTTATTACGAAATTTGGTCAACTAACTCCCCAGGAAAGGACAAAAAGGAAATTAGAGACTCTTGAGGCATTGAAGAAAACGTTTAAGAAGTTAGATCATGATGTAAATGTACAAGAATTTTTTGGTACAAGTAGTCAAACTATTGAGGATTTGAGTAATCAAGCCAAGCTATTACAAACTCAAATTTTTGGAACTCATAAGAGATTAAGTGTGGATCAACTAGGACGGATGGAAAATTCGCTCAGGGAGTCACTTGATCAAATTCGAACCCATAAGGAAAATGTAAAAAAGCAACAACAACTTGTTTCACTGCAATGCAATAACCAGTTGAATGAGATGAATATTCCCTTCAGAATGACTGCACAACAACTCCAACCTCTATCATGGATTGTCAATGACAACGACCAAAATATAGTTTTACCTGAAGACTCAAACATGTTTCTCCACAAAGATGTAGAGGGATCTGTAAGTTCATCTTTTGGGAGTTATGACAATTATTTTGGCTCAAGTATCAAAACTGATATGTCAAGCTCAACACAAGAAAATGGGGTCCTTAGTGACATGAGCAATATTGCCCCTATGAGACTCCAATTGAATGGGCAGTTTCCATGTCTTCAATACAATTTTAATTTACTAAACAATTTGAAGTTTCAACCAAGTGTAGAGATTAACCCACATGAAAATCATGTAGATTATCATGTGAATGAAGGCTTTGAAGCACCTAGATCGAGTTATGATTCTAACAATCACCATGGTTGGGCTTCCACATCAGGGTCTTGTGGTATTACTATGTTTGAAGAGCAATTATATGCCCAGGCAAGCTTCACTAAAGTGAACATTGACTTCACATAA

Predicted protein sequences of Glyma20g04500

Limit To All Plant Sequences

>Glyma20g04500.1   sequence type=predicted peptide   gene model=Glyma20g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHVYVMCRMGRVKLKIKRLENTNGRPATYAKRRNGIMKKAAELSILCDIDIILLMFAPNGKPSLCRGRCSNFEEVITKFGQLTPQERTKRKLETLEALKKTFKKLDHDVNVQEFFGTSSQTIEDLSNQAKLLQTQIFGTHKRLSHWTEFDKINSVDQLGRMENSLRESLDQIRTHKENVKKQQQLVSLQCNNQLNEMNIPFRMTAQQLQPLSWIVNDNDQNIVLPEDSNMFLHKDVEGSVSSSFGSYDNYFGSSIKTDMSSSTQENGVLSDMSNIAPMRLQLNGQFPCLQYNFNLLNNLKFQPSVEINPHENHVDYHVNEGFEAPRSSYDSNNHHGWASTSGSCGITMFEEQLYAQASFTKVNIDFT*

>Glyma20g04500.2   sequence type=predicted peptide   gene model=Glyma20g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHVYVMCRMGRVKLKIKRLENTNGRPATYAKRRNGIMKKAAELSILCDIDIILLMFAPNGKPSLCRGRCSNFEEVITKFGQLTPQERTKRKLETLEALKKTFKKLDHDVNVQEFFGTSSQTIEDLSNQAKLLQTQIFGTHKRLSVDQLGRMENSLRESLDQIRTHKENVKKQQQLVSLQCNNQLNEMNIPFRMTAQQLQPLSWIVNDNDQNIVLPEDSNMFLHKDVEGSVSSSFGSYDNYFGSSIKTDMSSSTQENGVLSDMSNIAPMRLQLNGQFPCLQYNFNLLNNLKFQPSVEINPHENHVDYHVNEGFEAPRSSYDSNNHHGWASTSGSCGITMFEEQLYAQASFTKVNIDFT*

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