Report for Sequence Feature Glyma20g04160
Feature Type: gene_model
Chromosome: Gm20
Start: 4213809
stop: 4221748
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g04160
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G14040 AT
Annotation by Michelle Graham. TAIR10: EXS (ERD1/XPR1/SYG1) family protein | chr1:4810488-4814543 FORWARD LENGTH=813
SoyBase E_val: 0 ISS
GO:0006817 GO-bp
Annotation by Michelle Graham. GO Biological Process: phosphate ion transport
SoyBase N/A ISS
GO:0016036 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
KOG1162
KOG
Predicted small molecule transporter
JGI ISS
PTHR10783 Panther
XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR
JGI ISS
PTHR10783:SF4 Panther
XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR XPR1
JGI ISS
PF03105 PFAM
SPX domain
JGI ISS
PF03124 PFAM
EXS family
JGI ISS
UniRef100_B9HIA2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pho1-like protein n=1 Tax=Populus trichocarpa RepID=B9HIA2_POPTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233DBAE UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233DBAE related cluster n=1 Tax=unknown RepID=UPI000233DBAE
SoyBase E_val: 0 ISS
Expression Patterns of Glyma20g04160
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma20g04160 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g032600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g04160
Coding sequences of Glyma20g04160
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g04160.1 sequence type=CDS gene model=Glyma20g04160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGTTTGGGAAAGAATACACATCCCAAATGGTGCCAGAATGGCAAGAAGCATACATGGATTACAATTTTCTAAAATCCCTTTTGAAAGAAATCCAACGCTTCAAGCTTAGGAACAAGCCTTCTCTCACCCCAAGTGGCCTAAGAAGAAAGCTAACACTATATAGAGCCTTCAGTGGCCTCACACAAACACACTACACTGTTTCTCACAGTCCCTCTCATCAGGAGCAAGATATTGAGAGCCAACCCATCATAGTGAACCGTGACGGCTCTGAAAATAAGTACGAAACTACGTTCCTTATGACCTCAGAAGAAGGTGGAGAATACGAGTTGGTGTACTTCAAGAGGCTCGATGATGAATTCAACAAAGTGGACAAGTTTTACAAGTCAAAAGTGGAGGAAGTGATGAAGGAAGCTGCAATGCTCAACAAGCAAATGGATGCTTTGATAGCTTTCAGGATCAAGGTTGAGAAGCCAAGTTTGTTGTTATTTGATCATTCTGTGGAGATGACTCGTCTTGCTTCTGATGTTGCTTCTTCATCTGCAGTGTTGGCAGTTTCCACACCCAAAGGGGCCAAATTGAACAGAAATGTTTCCATGGCCATGGAAATGATCGAAGAGAGCAACAGTCATAATGAACAATCAGATAATCAAGAACATGTAAAACCAAAAGTTGAGGCAGAGAAGCCAAAGAATACCAGGGTGACTAGACCAGCCCCTTTGGAAATACTTGATCGAGTGCATTTCAACCACAACTATGAAACTCCACGTTCAACTATAAAAGGTGTTCTCAATTTCCATAGCAATACAGAACTAGTTAATTTCAGCAGAAAAAATCTGAACAAAGTTGAGGAACAACTTAAAAGGACATTCATTGAATTCTACCGCAAGCTTAGGCTTCTAAAAAGCTATAGCTTTCTAAATATCTTGGCTTTTTCAAAGATAATGAAGAAATATGATAAGATCACATCAAGAGATGGAGCAAAAGCTTATATGGAAATGGTGGACAACTCCTACCTTGGAAGCTCTGATGTGGTGACAAAACTTATGGATAGGGTTGAAAAAACATTCACTAAGCACTTTTACAACTCGAATCGTAATAAAGCCATGCGTATCTTAAGACCAAAAACAAAGAGAGAAAGACATAGAGTTACATTTTCAATGGGTTTCTTCGCCGGATGCACAACAGCTCTAGTGTTAGCCCTTATTCTAATCATTCGTACTCGTAACATATTCGACAACTCAGAAACTACCAAGTACATGGAAACCTTGTTCCCACTGCACAGTCTGTATGGATTCATAGTTCTACACTTGTTGATGTATGCTGCAAATGTATACTTCTGGAGGCAATATAGAGTGAATCACTCATTCATATTTGGTTTTAAGAGAGGCACTGGCTTGGGATACAATGAAGTCCTTCTTCTCGGTTTTGGCCTAGCAGTTTTCGCACTCGGCAGTGTGCTTGCAAACCTAGACATGCAGATAGATCCAGAGACAAAAGATTACAAAACATTGACAGAACTTATTCCACTCATTTTGCTTCTTGTTGTGATTGCTATTTTATTGTGCCCCTTAAACATCATATATCGGTCAAGCAGGGTTTTCTTCCTCATATGCTTGTTTCACTGCATATGTGCTCCTCTTTACAAGGTCACATTCCCGGATTTCTTCTTGGCAGATCAATTTACTAGTCAGGTGCAAGCCTTGAGAAGTTTTGAGTTCTACATTTGTTACTACTGCGGGGGGGATTTCAAACAAAGAGAAAACACTTGCAACTCTAACAGTGTATTCATAACTTTTTCATTCATCGTTGCTGTTATTCCCTACTGGTGTCGTTTCCTCCAGTGTCTTAGGCGTCTGTTCGAAGAGAAAGATCCAATGCAAGGATATAACGGATTGAAATATTTCCTCACAATTATTGCTGTTTGCCTAAGGACAGCCTATAGTCTTAACAATTCAATGGTGTGGATGGTGCTGGCAATGATTTTCTCAATATTTGCAGCAGTTGCTTCTACATATTGGGACCTTGTAATTGACTGGGGCCTTTTGCAAGGGCATTCCAAGAATCGTTGGTTGAGAGACAAACTTGCAATCCCTCATAAAAGTGTATATTTTATAGCAATGGTCCTTAATGTCTTGCTGAGATTTGCCTGGTTGCAGACAGTTTTGAATTTTAAGTTTACCTTCTTTCACAAACAAGCCGTGAGTAGCATCGTTGCGTGTCTAGAGATCATTCGTCGTGGCATATGGAACTTCTTGAGAGTGGAGAATGAGCACTTGACTAATGTTGGCAAGTTCCGTGCATTCAAGTCCGTGCCTCTCCCTTTCAATTACGATGAAGATGAAGATAAAGATGATTGA
Predicted protein sequences of Glyma20g04160
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g04160.1 sequence type=predicted peptide gene model=Glyma20g04160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKFGKEYTSQMVPEWQEAYMDYNFLKSLLKEIQRFKLRNKPSLTPSGLRRKLTLYRAFSGLTQTHYTVSHSPSHQEQDIESQPIIVNRDGSENKYETTFLMTSEEGGEYELVYFKRLDDEFNKVDKFYKSKVEEVMKEAAMLNKQMDALIAFRIKVEKPSLLLFDHSVEMTRLASDVASSSAVLAVSTPKGAKLNRNVSMAMEMIEESNSHNEQSDNQEHVKPKVEAEKPKNTRVTRPAPLEILDRVHFNHNYETPRSTIKGVLNFHSNTELVNFSRKNLNKVEEQLKRTFIEFYRKLRLLKSYSFLNILAFSKIMKKYDKITSRDGAKAYMEMVDNSYLGSSDVVTKLMDRVEKTFTKHFYNSNRNKAMRILRPKTKRERHRVTFSMGFFAGCTTALVLALILIIRTRNIFDNSETTKYMETLFPLHSLYGFIVLHLLMYAANVYFWRQYRVNHSFIFGFKRGTGLGYNEVLLLGFGLAVFALGSVLANLDMQIDPETKDYKTLTELIPLILLLVVIAILLCPLNIIYRSSRVFFLICLFHCICAPLYKVTFPDFFLADQFTSQVQALRSFEFYICYYCGGDFKQRENTCNSNSVFITFSFIVAVIPYWCRFLQCLRRLFEEKDPMQGYNGLKYFLTIIAVCLRTAYSLNNSMVWMVLAMIFSIFAAVASTYWDLVIDWGLLQGHSKNRWLRDKLAIPHKSVYFIAMVLNVLLRFAWLQTVLNFKFTFFHKQAVSSIVACLEIIRRGIWNFLRVENEHLTNVGKFRAFKSVPLPFNYDEDEDKDD*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
