SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G14040 | AT | Annotation by Michelle Graham. TAIR10: EXS (ERD1/XPR1/SYG1) family protein | chr1:4810488-4814543 FORWARD LENGTH=813 | SoyBase | E_val: 0 | ISS |
| GO:0006817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphate ion transport | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| KOG1162 | KOG | Predicted small molecule transporter | JGI | ISS | |
| PTHR10783 | Panther | XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR | JGI | ISS | |
| PTHR10783:SF4 | Panther | XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR XPR1 | JGI | ISS | |
| PF03105 | PFAM | SPX domain | JGI | ISS | |
| PF03124 | PFAM | EXS family | JGI | ISS | |
| UniRef100_B9HIA2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pho1-like protein n=1 Tax=Populus trichocarpa RepID=B9HIA2_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NDM9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NDM9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g04130 not represented in the dataset |
Glyma20g04130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g032400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g04130.1 sequence type=CDS gene model=Glyma20g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGTTTGGGAAAGAATACACATCCCAAATGGTGCCAGAATGGCAAGAAGCATACATGGATTACAATTTTCTGAAATCCCATTTGAAAGAAATACAACGTTTCAGACAAAGAACCAAGCCTCCTACAGCCACTCCAAGAGGCCTAAGAAGAAAGCTAACACTATATAGAGCCTTCAGTGGCCTCACACAACAAAAACACTACCAACAACTTAGTCCCTCAGAACATGACATAGAGAGCCAACCTATAATGGTGCACTCAGTGAACAACCATGATGGCTATGAGAAGTACCAAACTACATTCCTTATGACTTCAGAAGAAGGTGGAGAATACGAGTTGGTGTACTTCAAGAGGCTCGATGATGAGTTCAACAAAGTGGGCAAGTTTTATAGATCAAAAGTGGAGGAAGTGATGACGGAAGCTGCAATACTTAACAAGCAAATGGATGCTTTGATCGCTTTCAGGATCAAAGTTGAGAACCCAACTGGGTCGTTTGATCGATCCATTGAGATGACTCGTCTTGCTTCTGATGTTGCTTCTTCATCTGCTGTGTTGTCAGCTTCCACACCCAAAGGAGCCAAATTGAACAGAAAGGTTACCATGGCCATGGAAGTGATTGAAGAGGGTAGTACTCATCACGAGCAATCAGATGATTCAAATGATGATCAAGAAGAACATGTGAAACAAACTGTAAAACCAAAAGTTGAGGTACAGAAGCCAAATAATGTCAGGGGCACTAGACCAGCTCCTTTGGAAGTACTTGATCGTGTGCAATTGAATCACTCCTTTGAAACTCCACGTTCAACTATCAAAGGTGTTCTCAATTTCCCTGGTAATACAGAACTAAATTTCAGTAGAAAAAATTTGAACAAAGTTGAGGAACAACTTCAACGGTCATTCATTGAATTCTACCGCAAGCTTAGGCTTCTAAAAAGCTATAGCTTCCTGAATACATTGGCATTTTCAAAGATAATGAAGAAATATGATAAGATCACGTCAAGAGATGCAGCTAAAGCTTATATGAAAATGGTGGACAACTCCCACCTTGGAAGTTCTGATGAGGTCACAAAGCTCATGGATAGAGTTGAGAAAACATTCACTAAGCACTTCTACAACTCAAATCGTAATAAAGCCATGAATATCTTAAGACCAAAGGCAAAGAGAGAAAGACATAGAGTTACATTTTCAATGGGTTTCTTAGCAGGATGCACAGCGGCTCTTGTGTTAGCCCTAATTCTAATCGTTCGTACTCGTAAAATATTGGATGAGTCAGGGAGTACTAAGTACATGGATACCTTGTTCCCACTGAACAGTCTATATGGATACATAGTTCTACACATGCTGATGTATGCAGCAAATATTTACTTCTGGAGGCGATACAGAGTGAACCACTCATTCATATTTGGTTTTAAACAAGGCACTGAGTTGGGCTACAATCAAGTCCTTCTCCTAGGTTTTGGTCTAGCAGTATTGGCGCTCGGCGGTGTGCTTGTAAACCTAGACATGCAGATTGATCCACAAACAAAAGATTACAAAACATTGACTGAACTTATTCCACTCATCTTGCTGCTTGTTGTGATTGCTATTTTACTGTGCCCCATAAACATCTTTTATCGCTCAAGCAGGGTTTTCTTTCTCATATGCTTGTTTCACTGCATATGTACTCCTCTTTACAAGGTCACACTCCCGGATTTCTTCATGGCAGATCAATTTACTAGCCAGGTGGAAGCCTTGAGAAGTTTTGAGTTGTACATATGCTACTATGGCTGGGGGGATTTCAAACAGAGAGAAAACACTTGCAACTCTAGTAGTGTATTCATAACTTTTAAATTCATCGTTGCCGTCATTCCCTACTGGTCTCGTTTCCTTCAGTGTCTCAGGCGCCTGTTCGAAGAGAAAGATCCAATGCAAGGATATAACGGATTGAAATATTTCCTCACAATTGTTGCTGTTTGCTTTAGGACAGCCTATAGTCGTAACAATTCAATGGCGTGGATGGTGCTGGCTTGGATTTTCTCAGTATTTGCAGCAGTTGCATCTACATATTGGGACCTTGTAATTGATTGGGGCCTTTTGCAAAGGCGTTCCAAGAATCGCTGGTTGAGAGACAAACTTGCAGTCCCTCATAAAAGTGTATATTTCTTAGCCATGGTCCTTAATGTCTTGCTGAGATTCGCTTGGTTGCAGACTGTTTTGAATTTCAAGTTTAGCTTCTTGCATAAACAAGCCATGACTACTATTGTTGCATGTCTAGAGATCATTCGTCGTGGCATGTGGAACTTCTTCAGATTGGAGAATGAGCACTTGAACAATGTTGGCAAGTACCGTGCATTCAAGTCAGTGCCTCTACCCTTCAATTACGACGAAGATGAAGATAAAGATGAGTGA
>Glyma20g04130.1 sequence type=predicted peptide gene model=Glyma20g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKFGKEYTSQMVPEWQEAYMDYNFLKSHLKEIQRFRQRTKPPTATPRGLRRKLTLYRAFSGLTQQKHYQQLSPSEHDIESQPIMVHSVNNHDGYEKYQTTFLMTSEEGGEYELVYFKRLDDEFNKVGKFYRSKVEEVMTEAAILNKQMDALIAFRIKVENPTGSFDRSIEMTRLASDVASSSAVLSASTPKGAKLNRKVTMAMEVIEEGSTHHEQSDDSNDDQEEHVKQTVKPKVEVQKPNNVRGTRPAPLEVLDRVQLNHSFETPRSTIKGVLNFPGNTELNFSRKNLNKVEEQLQRSFIEFYRKLRLLKSYSFLNTLAFSKIMKKYDKITSRDAAKAYMKMVDNSHLGSSDEVTKLMDRVEKTFTKHFYNSNRNKAMNILRPKAKRERHRVTFSMGFLAGCTAALVLALILIVRTRKILDESGSTKYMDTLFPLNSLYGYIVLHMLMYAANIYFWRRYRVNHSFIFGFKQGTELGYNQVLLLGFGLAVLALGGVLVNLDMQIDPQTKDYKTLTELIPLILLLVVIAILLCPINIFYRSSRVFFLICLFHCICTPLYKVTLPDFFMADQFTSQVEALRSFELYICYYGWGDFKQRENTCNSSSVFITFKFIVAVIPYWSRFLQCLRRLFEEKDPMQGYNGLKYFLTIVAVCFRTAYSRNNSMAWMVLAWIFSVFAAVASTYWDLVIDWGLLQRRSKNRWLRDKLAVPHKSVYFLAMVLNVLLRFAWLQTVLNFKFSFLHKQAMTTIVACLEIIRRGMWNFFRLENEHLNNVGKYRAFKSVPLPFNYDEDEDKDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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