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Report for Sequence Feature Glyma20g04072

Feature Type:gene_model
Chromosome:Gm20
Start:4152141
stop:4152353
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g04072
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G14040AT Annotation by Michelle Graham. TAIR10: EXS (ERD1/XPR1/SYG1) family protein | chr1:4810488-4814543 FORWARD LENGTH=813 SoyBaseE_val: 2.00E-19ISS
GO:0006817GO-bp Annotation by Michelle Graham. GO Biological Process: phosphate ion transport SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
PF03105PFAM SPX domain JGI ISS
UniRef100_B9HXW5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pho1-like protein n=1 Tax=Populus trichocarpa RepID=B9HXW5_POPTR SoyBaseE_val: 1.00E-24ISS
UniRef100_I1NDM9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NDM9_SOYBN SoyBaseE_val: 5.00E-34ISS

Expression Patterns of Glyma20g04072
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g04072 not represented in the dataset
Glyma20g04072 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g04072 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g032200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g04072
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g04072
>Glyma20g04072.1   sequence type=CDS   gene model=Glyma20g04072   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTTGGGAAAGAATACACATCCCAAATGGTGCCAAAATGGCAAGATGCATACATGAATTACAATTTTCAGAAATCTTATTTGAAAGAAATACAACGTTTTAGACAAAGAACCAAGCCTCCTACAGCCACTCCAAGAGGCCTAAGAAGAAAGCTAACACTGTATAGAGCCTTTAGTGGCCTCACACAACAAAAATTGATTGATGAGTGA
Predicted protein sequences of Glyma20g04072
>Glyma20g04072.1   sequence type=predicted peptide   gene model=Glyma20g04072   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFGKEYTSQMVPKWQDAYMNYNFQKSYLKEIQRFRQRTKPPTATPRGLRRKLTLYRAFSGLTQQKLIDE*






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