|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G46280 | AT | Annotation by Michelle Graham. TAIR10: Minichromosome maintenance (MCM2/3/5) family protein | chr5:18769902-18773606 REVERSE LENGTH=776 | SoyBase | E_val: 9.00E-68 | ISS |
GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
GO:0006268 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA unwinding involved in replication | SoyBase | N/A | ISS |
GO:0006270 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication initiation | SoyBase | N/A | ISS |
GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
GO:0016458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing | SoyBase | N/A | ISS |
GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
GO:0000790 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear chromatin | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
GO:0008094 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity | SoyBase | N/A | ISS |
GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
PTHR11630 | Panther | DNA REPLICATION LICENSING FACTOR | JGI | ISS | |
PTHR11630:SF46 | Panther | DNA REPLICATION LICENSING FACTOR MCM3 | JGI | ISS | |
PF00493 | PFAM | MCM2/3/5 family | JGI | ISS | |
UniRef100_Q8H1A2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mini-chromosome maintenance protein MCM3 n=1 Tax=Pisum sativum RepID=Q8H1A2_PEA | SoyBase | E_val: 3.00E-70 | ISS |
UniRef100_UPI000233DAED | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DAED related cluster n=1 Tax=unknown RepID=UPI000233DAED | SoyBase | E_val: 2.00E-98 | ISS |
Glyma20g04016 not represented in the dataset |
Glyma20g04016 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.20g031900 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g04016.1 sequence type=CDS gene model=Glyma20g04016 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGCATAAGAAGAAGAATGGCAGCGAAAACGGCAACAACAAGGAGAACGAAGACACCACCATCATCGATGTCTTGAAGGTCGAAGCGCACTACGACGATTGCGCTCCACTTTGTGGCATAGAAAGCTTTTATTTTGATTATAAGTTTAGATATCCTGAGAATTCTGCTCCTGGTCAACTCCCAAGAATAGTGGATGTAATTGCAGAAGACGACCTTGTTGATTCTTGCAAGCCTGGAGATCGAGTGGCAATTGTGGGGATATATAAGGCTCTTGCAAGGAAAAGGCAGACTGTTCTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGCTAATACACCAATCTACAGTGTTGAAGATGTCAAAAACATTAAAGAGATAGCTGCAAGAGATGATGCATTTGATCTGCTAAGTAATTCACTTGCACCTTCTATATATGGGCATTCTTGGATAAAGAAAGCAGTGGTTTTGTTGATGCTTAGTGGGGTGGAGAAGAATTTAAAGAATGGCACTCACTTGCGAGGTGACATCAACATGATGATGGTTGGCTATCATTCGTCATGGACTATATATATGGAACTGTTTTATCGTATTTGA
>Glyma20g04016.1 sequence type=predicted peptide gene model=Glyma20g04016 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLHKKKNGSENGNNKENEDTTIIDVLKVEAHYDDCAPLCGIESFYFDYKFRYPENSAPGQLPRIVDVIAEDDLVDSCKPGDRVAIVGIYKALARKRQTVLIANNVSLLNKEANTPIYSVEDVKNIKEIAARDDAFDLLSNSLAPSIYGHSWIKKAVVLLMLSGVEKNLKNGTHLRGDINMMMVGYHSSWTIYMELFYRI*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||