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Report for Sequence Feature Glyma20g04016

Feature Type:gene_model
Chromosome:Gm20
Start:4047455
stop:4049821
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G46280AT Annotation by Michelle Graham. TAIR10: Minichromosome maintenance (MCM2/3/5) family protein | chr5:18769902-18773606 REVERSE LENGTH=776 SoyBaseE_val: 9.00E-68ISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006268GO-bp Annotation by Michelle Graham. GO Biological Process: DNA unwinding involved in replication SoyBaseN/AISS
GO:0006270GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication initiation SoyBaseN/AISS
GO:0006275GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0016458GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing SoyBaseN/AISS
GO:0034968GO-bp Annotation by Michelle Graham. GO Biological Process: histone lysine methylation SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0000790GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear chromatin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008094GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
PTHR11630Panther DNA REPLICATION LICENSING FACTOR JGI ISS
PTHR11630:SF46Panther DNA REPLICATION LICENSING FACTOR MCM3 JGI ISS
PF00493PFAM MCM2/3/5 family JGI ISS
UniRef100_Q8H1A2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mini-chromosome maintenance protein MCM3 n=1 Tax=Pisum sativum RepID=Q8H1A2_PEA SoyBaseE_val: 3.00E-70ISS
UniRef100_UPI000233DAEDUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DAED related cluster n=1 Tax=unknown RepID=UPI000233DAED SoyBaseE_val: 2.00E-98ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g04016 not represented in the dataset

Glyma20g04016 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g031900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma20g04016.1   sequence type=CDS   gene model=Glyma20g04016   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCATAAGAAGAAGAATGGCAGCGAAAACGGCAACAACAAGGAGAACGAAGACACCACCATCATCGATGTCTTGAAGGTCGAAGCGCACTACGACGATTGCGCTCCACTTTGTGGCATAGAAAGCTTTTATTTTGATTATAAGTTTAGATATCCTGAGAATTCTGCTCCTGGTCAACTCCCAAGAATAGTGGATGTAATTGCAGAAGACGACCTTGTTGATTCTTGCAAGCCTGGAGATCGAGTGGCAATTGTGGGGATATATAAGGCTCTTGCAAGGAAAAGGCAGACTGTTCTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGCTAATACACCAATCTACAGTGTTGAAGATGTCAAAAACATTAAAGAGATAGCTGCAAGAGATGATGCATTTGATCTGCTAAGTAATTCACTTGCACCTTCTATATATGGGCATTCTTGGATAAAGAAAGCAGTGGTTTTGTTGATGCTTAGTGGGGTGGAGAAGAATTTAAAGAATGGCACTCACTTGCGAGGTGACATCAACATGATGATGGTTGGCTATCATTCGTCATGGACTATATATATGGAACTGTTTTATCGTATTTGA

>Glyma20g04016.1   sequence type=predicted peptide   gene model=Glyma20g04016   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLHKKKNGSENGNNKENEDTTIIDVLKVEAHYDDCAPLCGIESFYFDYKFRYPENSAPGQLPRIVDVIAEDDLVDSCKPGDRVAIVGIYKALARKRQTVLIANNVSLLNKEANTPIYSVEDVKNIKEIAARDDAFDLLSNSLAPSIYGHSWIKKAVVLLMLSGVEKNLKNGTHLRGDINMMMVGYHSSWTIYMELFYRI*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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