Glyma20g03900 - SoyBase

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Report for Sequence Feature Glyma20g03900

Feature Type:	gene_model
Chromosome:	Gm20
Start:	3802736
stop:	3806086
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g03900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G59960	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein \| chr1:22071410-22073067 REVERSE LENGTH=326	SoyBase	E_val: 4.00E-119	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1577	KOG	Aldo/keto reductase family proteins	JGI		ISS
PTHR11732	Panther	ALDO/KETO REDUCTASE	JGI		ISS
PTHR11732:SF34	Panther	3-CHLOROBENZOATE-3,4-DIOXYGENASE DYHYDROGENASE-RELATED	JGI		ISS
PF00248	PFAM	Aldo/keto reductase family	JGI		ISS
UniRef100_G7J9I2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAD(P)H-dependent 6'-deoxychalcone synthase n=1 Tax=Medicago truncatula RepID=G7J9I2_MEDTR	SoyBase	E_val: 8.00E-137	ISS
UniRef100_I1NDM3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NDM3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g03900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g03900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g031100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g03900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g03900

Limit To All Plant Sequences

>Glyma20g03900.1   sequence type=CDS   gene model=Glyma20g03900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGCAACAAACGTCCCCAAAGTGCTGTTACAACTACAACCACCCTCCAAATCGAACCCACTCTGCGTGCCGGTGATAGGACTCGGCACCGCCGCGGTCCACAACGACGGTGACACGGTGAAGGCTGCAGTCATAGAGGCTATCAAACTCGGTTACAGACACTTCGACACCGCGGCACAGTACGGATCGGAGCAGGCTCTTGGAGAAGCCATTGCCGAAGCACTTCGTGTTGGTCTCATAGCCTCAAGAGACGAGCTTTTCATCACTTCCAAGTTATGGTGTTGTGATAATCATCCCCATCTTGTTCTTCCTGCTCTACAAAATTCGCTTCGGTCTCTTAAATTAGATTATTTGGACCTATATTTAATTCATTGGCCAATTACTGCAAAGCCTGGAATGTGGGAGATGCCTTATTCTGAAGAGAGCCTTGTTCCATTTGACTTAAAGAGTGTGTGGGCAGCAATGGAAGAATGTCACAAACTTGGCCTTACCAAATCAATTGGAGTTAGCAACTTCTCTTGCAAGAAACTTGAAAATCTTCTCTCTTTTGCTACAATTCCTCCTTCTGTCAATCAAGTGGAGATGAATATTGCCTGGCAGCAAAAGAATCTTAGAGCATACTGCAAGGCAAAGGGTATAATTGTGACTGCCTACTCTCCTTTGGGAGCCAAAGGGAGCAAATGGGATATCAATCAAATTTTGGACAATGAATTGACCAAGCAGATTGCACAGGCTCATGGCAAAACTGCAGCTCAGGTATGTCTTAGATGGTTATTTGAGCAAGGTGTGACTTTCATACCAAAGAGCTACAATAAAGAGAGATTAAAGGAAAATTTAGAGATATTTGATTGGTCACTCACCAAAGATGACCATGAAAAGATTAATCAAGTCAAACAGGAGCGTATGTTCAAGTACGGAACAGCAGCATTCCCGCTTCCTGATCTATTTGATGGGGAAACTTAG

Predicted protein sequences of Glyma20g03900

Limit To All Plant Sequences

>Glyma20g03900.1   sequence type=predicted peptide   gene model=Glyma20g03900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSATNVPKVLLQLQPPSKSNPLCVPVIGLGTAAVHNDGDTVKAAVIEAIKLGYRHFDTAAQYGSEQALGEAIAEALRVGLIASRDELFITSKLWCCDNHPHLVLPALQNSLRSLKLDYLDLYLIHWPITAKPGMWEMPYSEESLVPFDLKSVWAAMEECHKLGLTKSIGVSNFSCKKLENLLSFATIPPSVNQVEMNIAWQQKNLRAYCKAKGIIVTAYSPLGAKGSKWDINQILDNELTKQIAQAHGKTAAQVCLRWLFEQGVTFIPKSYNKERLKENLEIFDWSLTKDDHEKINQVKQERMFKYGTAAFPLPDLFDGET*

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