SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G42440 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; | SoyBase | E_val: 1.00E-69 | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0042254 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR12858 | Panther | RIBOSOME BIOGENESIS PROTEIN | JGI | ISS | |
| PTHR12858:SF1 | Panther | RIBOSOME BIOGENESIS PROTEIN TSR1 (20S RRNA ACCUMULATION PROTEIN 1) | JGI | ISS | |
| PF04950 | PFAM | Protein of unknown function (DUF663) | JGI | ISS | |
| UniRef100_B9R8L9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribosome biogenesis protein tsr1, putative n=1 Tax=Ricinus communis RepID=B9R8L9_RICCO | SoyBase | E_val: 2.00E-80 | ISS |
| UniRef100_I1K7D9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7D9_SOYBN | SoyBase | E_val: 1.00E-108 | ISS |
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Glyma20g03805 not represented in the dataset |
Glyma20g03805 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g030400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g03805.1 sequence type=CDS gene model=Glyma20g03805 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGTGCCCAGTGCTATTGCTTCAAAGTTATCTTTGCTTGCAAAGACAATCCCAATTACAGCATGTGGCCTATTGAAACATGAGTCCAAAGTATCTGTCCTTCATTTCAGTGTGAAGAAGCATGAAGCATATGATGCACCCATCAAATCCAAGGAAGAGTTAATTTTCCATGTTGGGTTTCAGCAATTTGTTGGCTGGCCAATTTTCTCTAGCGAGTTCATAAATACAGACAAGAACAAGATGGAGAGGTTTCTCCATGCTGGGCGTTTTTCAGTTGCTTCAATCTATGCACCAGTTTCCTTTCCTCCTCTTCCTATGATAATCCTAAAGAGAAATGGAGAGAATGCTACCCCTGTAGTGGCAGCTGTTGGCTCACTGAAAACTGTTGATGCAGATAGGATAATCCTTAAGCGAGTTATTTTGACAGGTTATCCCCAAAGAGTGTCGAAACGTAAAGCTTCTGTGAGACACATGTTTTATAATCCGGAGGATGTTAAATGGTTTGAGGTGAAAATACATTACCCATTGTCTGGATTCTTTAAATTATACTTGTTGGATGGTAGTGAAGTTTACATATAA
>Glyma20g03805.1 sequence type=predicted peptide gene model=Glyma20g03805 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGVPSAIASKLSLLAKTIPITACGLLKHESKVSVLHFSVKKHEAYDAPIKSKEELIFHVGFQQFVGWPIFSSEFINTDKNKMERFLHAGRFSVASIYAPVSFPPLPMIILKRNGENATPVVAAVGSLKTVDADRIILKRVILTGYPQRVSKRKASVRHMFYNPEDVKWFEVKIHYPLSGFFKLYLLDGSEVYI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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