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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G36190 | AT | Annotation by Michelle Graham. TAIR10: cell wall invertase 4 | chr2:15174951-15177785 REVERSE LENGTH=591 | SoyBase | E_val: 1.00E-100 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0005987 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sucrose catabolic process | SoyBase | N/A | ISS |
| GO:0071836 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nectar secretion | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0004575 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sucrose alpha-glucosidase activity | SoyBase | N/A | ISS |
| KOG0228 | KOG | Beta-fructofuranosidase (invertase) | JGI | ISS | |
| PF00251 | PFAM | Glycosyl hydrolases family 32 N-terminal domain | JGI | ISS | |
| PF08244 | PFAM | Glycosyl hydrolases family 32 C terminal | JGI | ISS | |
| UniRef100_Q2HTE2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-fructofuranosidase, insoluble isoenzyme n=1 Tax=Medicago truncatula RepID=Q2HTE2_MEDTR | SoyBase | E_val: 3.00E-125 | ISS |
| UniRef100_UPI000233DA92 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DA92 related cluster n=1 Tax=unknown RepID=UPI000233DA92 | SoyBase | E_val: 3.00E-180 | ISS |
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Glyma20g03553 not represented in the dataset |
Glyma20g03553 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g028600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g03553.2 sequence type=transcript gene model=Glyma20g03553 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCCACTTCTGGGTGAAACCAGACAAGCTCAACCCAGTTGTGGTAGATAAAGATGTTAACAACACTGAATTTCGTGACCCCACAGCAGCTTGGTGGGGCAAGGACGGTCACTGGAGGATGCTGGTGGGCAGTGTAAGGAAGCGCAGAGGAATAGCTTATCTATACGGAAGCAAGGACTTCATGACATGGGTTCGGGCCAAACACCCTATCCATTCCAAGGGTGGTACGGGTATGTGGGAGTGCCCCAACTTTTACCCAGTTTCAGTTATAGGAAATGTAGTGGTGAATATAGTGAAATATGTGTTGAAGAACAACCTTGATGATACTAAGTTCGATTACTACAATGTGGGGACCTATATGGAGGATAAGGATAGGTATGTGCCTGACAACACTTCAGTGGATGGTTGGGGTGGACTTAGTCTCAGAGGCAAAGAAGTTAACATAGACAATCAAAGGCTTGAGAAGAGAGATTATAGTGAAGTAAAAGGAATCACTGCTGCCCAGGCAGATGTTGAAGTTACGTTCTCCTTTTCAAGCTTGGACAAGGCAGAGGTGGGGTTCAAAACTACAGGGTGGGGTTGGACCGTTTGGACTTCTGACTTTGGCTACTCAAAATCTCGAAGAGTTCACTCCTGTGTTTTTCAGAGTTTTCAAAAGTCCAAATAAGCATATTGTTCTCTTATGCTCTGATGCGAGAAGTTCATCTTTGAAGAGTGATCTGTACAAACCACAATTTGCTGTGTTTGTAGATGTGGATTTGACCGTGGATAAGAAGATTTCTCTTAGGAGTTTGATTGATCACTCAGTTGTGGAGAGTTTTGGAGCAGGAGGGAAGACAAACATTTTGTCCCGAGTCTATCCTGAGCTAGCAGTGATGAACCAAGCGCACTTGTTTGTGTTCAACAATGGTACTGAACCAATCGTAGTGCAAAACCTCAAAGCTTGGAGCATGATATCAACTGATATAAAATGATCAGCCTGAAGCAATTGAAGTCCAAGTTAGTTAGGTGGTTACTGG
>Glyma20g03553.1 sequence type=CDS gene model=Glyma20g03553 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCCACTTCTGGGTGAAACCAGACAAGCTCAACCCAGTTGTGGTAGATAAAGATGTTAACAACACTGAATTTCGTGACCCCACAGCAGCTTGGTGGGGCAAGGACGGTCACTGGAGGATGCTGGTGGGCAGTGTAAGGAAGCGCAGAGGAATAGCTTATCTATACGGAAGCAAGGACTTCATGACATGGGTTCGGGCCAAACACCCTATCCATTCCAAGGGTGGTACGGGTATGTGGGAGTGCCCCAACTTTTACCCAGTTTCAGTTATAGGAAATGTAGTGGTGAATATAGTGAAATATGTGTTGAAGAACAACCTTGATGATACTAAGTTCGATTACTACAATGTGGGGACCTATATGGAGGATAAGGATAGGTATGTGCCTGACAACACTTCAGTGGATGGTTGGGGTGGACTTAGTCTCAGAGGCAAAGAAGTTAACATAGACAATCAAAGGCTTGAGAAGAGAGATTATAGTGAAGTAAAAGGAATCACTGCTGCCCAGGCAGATGTTGAAAGGTGGGGTTCAAAACTACAGGGTGGGGTTGGACCGTTTGGACTTCTGACTTTGGCTACTCAAAATCTCGAAGAGTTCACTCCTGTGTTTTTCAGAGTTTTCAAAAGTCCAAATAAGCATATTGTTCTCTTATGCTCTGATGCGAGAAGTTCATCTTTGAAGAGTGATCTGTACAAACCACAATTTGCTGTGTTTGTAGATGTGGATTTGACCGTGGATAAGAAGATTTCTCTTAGGAGTTTGATTGATCACTCAGTTGTGGAGAGTTTTGGAGCAGGAGGGAAGACAAACATTTTGTCCCGAGTCTATCCTGAGCTAGCAGTGATGAACCAAGCGCACTTGTTTGTGTTCAACAATGGTACTGAACCAATCGTAGTGCAAAACCTCAAAGCTTGGAGCATGATATCAACTGATATAAAATGA >Glyma20g03553.2 sequence type=CDS gene model=Glyma20g03553 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCCACTTCTGGGTGAAACCAGACAAGCTCAACCCAGTTGTGGTAGATAAAGATGTTAACAACACTGAATTTCGTGACCCCACAGCAGCTTGGTGGGGCAAGGACGGTCACTGGAGGATGCTGGTGGGCAGTGTAAGGAAGCGCAGAGGAATAGCTTATCTATACGGAAGCAAGGACTTCATGACATGGGTTCGGGCCAAACACCCTATCCATTCCAAGGGTGGTACGGGTATGTGGGAGTGCCCCAACTTTTACCCAGTTTCAGTTATAGGAAATGTAGTGGTGAATATAGTGAAATATGTGTTGAAGAACAACCTTGATGATACTAAGTTCGATTACTACAATGTGGGGACCTATATGGAGGATAAGGATAGGTATGTGCCTGACAACACTTCAGTGGATGGTTGGGGTGGACTTAGTCTCAGAGGCAAAGAAGTTAACATAGACAATCAAAGGCTTGAGAAGAGAGATTATAGTGAAGTAAAAGGAATCACTGCTGCCCAGGCAGATGTTGAAGTTACGTTCTCCTTTTCAAGCTTGGACAAGGCAGAGGTGGGGTTCAAAACTACAGGGTGGGGTTGGACCGTTTGGACTTCTGACTTTGGCTACTCAAAATCTCGAAGAGTTCACTCCTGTGTTTTTCAGAGTTTTCAAAAGTCCAAATAA
>Glyma20g03553.1 sequence type=predicted peptide gene model=Glyma20g03553 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTHFWVKPDKLNPVVVDKDVNNTEFRDPTAAWWGKDGHWRMLVGSVRKRRGIAYLYGSKDFMTWVRAKHPIHSKGGTGMWECPNFYPVSVIGNVVVNIVKYVLKNNLDDTKFDYYNVGTYMEDKDRYVPDNTSVDGWGGLSLRGKEVNIDNQRLEKRDYSEVKGITAAQADVERWGSKLQGGVGPFGLLTLATQNLEEFTPVFFRVFKSPNKHIVLLCSDARSSSLKSDLYKPQFAVFVDVDLTVDKKISLRSLIDHSVVESFGAGGKTNILSRVYPELAVMNQAHLFVFNNGTEPIVVQNLKAWSMISTDIK* >Glyma20g03553.2 sequence type=predicted peptide gene model=Glyma20g03553 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTHFWVKPDKLNPVVVDKDVNNTEFRDPTAAWWGKDGHWRMLVGSVRKRRGIAYLYGSKDFMTWVRAKHPIHSKGGTGMWECPNFYPVSVIGNVVVNIVKYVLKNNLDDTKFDYYNVGTYMEDKDRYVPDNTSVDGWGGLSLRGKEVNIDNQRLEKRDYSEVKGITAAQADVEVTFSFSSLDKAEVGFKTTGWGWTVWTSDFGYSKSRRVHSCVFQSFQKSK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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