Glyma20g03410 - SoyBase

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Report for Sequence Feature Glyma20g03410

Feature Type:	gene_model
Chromosome:	Gm20
Start:	3214242
stop:	3219009
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g03410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G03340	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 3 \| chr2:1014724-1016936 REVERSE LENGTH=513	SoyBase	E_val: 1.00E-135	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G7JWM9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=18 Tax=rosids RepID=G7JWM9_MEDTR	SoyBase	E_val: 2.00E-162	ISS
UniRef100_I1NDJ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NDJ8_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma20g03410

Locus	Gene Symbol	Protein Name
	WRKY180	WRKY Transcription Factor

Expression Patterns of Glyma20g03410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g03410

Paralog	Evidence	Comments
Glyma07g35381	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g03410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g028000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g03410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g03410

Limit To All Plant Sequences

>Glyma20g03410.1   sequence type=CDS   gene model=Glyma20g03410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGACGGCGGAAAAGGAGAGGGAGGAGGAGAGCAAGCATCGCCACCCTCGACGGCGGCGCGTCACGGAACCACTCTCCGGCCACGCGCCTCCGTGGAGAGTGTTTTCAGCGGCGGGTATAGCCCCGGTCCCATGGCTCTGCTTTCCAATTTCTACGGCGACGGCGATGAGTGCAAGTCGTTCTCGGAGCTCCTCGCCGGCGCCATGGTGGACCCCACGGCACCCTCGCCCATGCCCACCACAACGTTCGCGCTTCCACCTGGATTCATCGATTCACCTTCTCAAGGCCAATTTGGAATAACACACCAGCAGATGCTAGCACAGATCTCATCTCAAGCTGTGCAAACCCACTCTGAACATCCATTCTCTATATCAGCCGTATCTGCTACCTCATCATGTGCTGCACAACAGCTGATTCCACCCTCAATGCCAGATTCTAAGGTGAAAGAATCCCTTGATTATTCTCACTCTGAACAAAAATTGCAGTCTTCTGTGAATGTTGATAATAAGCCTAATAATGATGGTTACAACTGGAGGAAGTATGGGCAAAAACATGTGAAAGGTAGTGACTTCTCAAGAAGTTATTATAAGTGCACACGTCCAAATTGTCCTGTGAAGAAAAAACTTGAGCGTTCTCTTGAGGGTCATGTGACTGCAATTATTTATAAAGGAGAACACAATCATCAACGTCCTCATCGCAGTAAGATTGTGAAAGAAACACAAACTTCAAATGAAAATTCAGTGTCTAAGATGGATCTAGGGTCTAGTCAGGCCACAGGTGAACATGGATCAGGAACAAGTGATAGTGAGGAAGTAGATGACCATGAAACTGAAGCAGATGAGAAAAATGATGAACCTGATGCCAAGAGAAGAAACACAGAAGCCAGGATCCAGGATCCAGCCACTTTGCATAGATCTGTTGCAGAGCCTAGAATCATTGTGCAAACAACAAGTGAAGTGAATCTCTTAGATGATGGATATCGATGGCGCAAATATGGGCAGAAAGTTGTCAAAGGCAACCCATATCCAAGGAGCTATTACAAATGCACGACCCAAGGTTGCAAAGTTCGGAAGCATGTTGAGAGGGCTTCAATGGATCCTAAAGCTGTCATAACAACATACGAAGGAAAACACAATCATGATGTGCCTGCAGCTAAGACTAATAGCCACACACTTGCCAACAATAGTGCATCCCAGCTAAAAGCACAAAAGTTTGCCATACCCGACGTGAAACATAGTTCCAGCAGCAGGGGTGTTACTGGCAATGAGCAGCGACCTGTGGCAAGTCTAAGATTGAAGGAAGAGCAGATCACATAG

Predicted protein sequences of Glyma20g03410

Limit To All Plant Sequences

>Glyma20g03410.1   sequence type=predicted peptide   gene model=Glyma20g03410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDGGKGEGGGEQASPPSTAARHGTTLRPRASVESVFSGGYSPGPMALLSNFYGDGDECKSFSELLAGAMVDPTAPSPMPTTTFALPPGFIDSPSQGQFGITHQQMLAQISSQAVQTHSEHPFSISAVSATSSCAAQQLIPPSMPDSKVKESLDYSHSEQKLQSSVNVDNKPNNDGYNWRKYGQKHVKGSDFSRSYYKCTRPNCPVKKKLERSLEGHVTAIIYKGEHNHQRPHRSKIVKETQTSNENSVSKMDLGSSQATGEHGSGTSDSEEVDDHETEADEKNDEPDAKRRNTEARIQDPATLHRSVAEPRIIVQTTSEVNLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCKVRKHVERASMDPKAVITTYEGKHNHDVPAAKTNSHTLANNSASQLKAQKFAIPDVKHSSSSRGVTGNEQRPVASLRLKEEQIT*

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