|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G69340 | AT | Annotation by Michelle Graham. TAIR10: appr-1-p processing enzyme family protein | chr1:26066298-26069644 FORWARD LENGTH=562 | SoyBase | E_val: 0 | ISS |
GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
KOG2633 | KOG | Hismacro and SEC14 domain-containing proteins | JGI | ISS | |
PTHR11106 | Panther | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED | JGI | ISS | |
PTHR11106:SF4 | Panther | UNCHARACTERIZED | JGI | ISS | |
PF01661 | PFAM | Macro domain | JGI | ISS | |
UniRef100_B9SBR4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ganglioside induced differentiation associated protein, putative n=1 Tax=Ricinus communis RepID=B9SBR4_RICCO | SoyBase | E_val: 0 | ISS |
UniRef100_UPI000233DA36 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DA36 related cluster n=1 Tax=unknown RepID=UPI000233DA36 | SoyBase | E_val: 0 | ISS |
Glyma20g03330 not represented in the dataset |
Glyma20g03330 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.20g027400 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g03330.1 sequence type=CDS gene model=Glyma20g03330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATATGCCTGTGGCTACCTCTGCCACGCTGCGCGGCGGATTGCCTACTGACAGTGGGGACTCTGTTGTGGCATTAGACCAAGTTCCTCGATGGAATGATGCTGATCAGGCCTTGGGGTTTGAAACTTCGTTTTCGAGTTCACACTTCCCCGATCCTTTAGCATCGCCCTCAAGGGTAGACAGTGGCGATGGCAGTGAGTCGGTGTCAAAGTTTCCTGTTGACGATGAAGTCAATTCGAAGATATATTTGTGGCGGGGGAATCCCTGGAATCTTGAGGTGGATGCGGTCGTAAATTCTACAAATGAGAATATGGATGAAGCACACAGCAGCCCAGGGTTGCATGATGCAGCTGGACCTGGTCTTGCAGAAGAATGTGCGACACTGGGTGGATGTCGAACAGGGATGGCTAAAGTTACCAAGCCATATGACCTTCCTGCCAGGAAAATTATCCACACTGTTGGCCCAAAGTATGCTATAAAGTACCATAATGCTGCAGAGAATGCTTTAAGTCATTGCTATCGTTCTTGCTTGGAGCTTCTGATTGAAAATGGGCTTCAAAGCATTGCTATGGGCTGTATTTATACGGAGGCAAAGAACTATCCCCGAGAACCAGCTGCACATGTAGCTATAAGAACAGTGCGGCGATTTCTTGAGAAGCAGAAAAACAACATAATAGCTGTTGTCTTTTGCACTGTGAGCACAACTGATACTGAGATATATAAAAGGTTGCTTCCACTGTACTTTCCTCGGGATAAACATGAGGAGCAGGTTGCTTTGTCTAAACTTCCTGCAGATGTTGGGGATGAAAATGGTGAGACAATCTCAGATGAGCGTAAAATCAGAATAAAGCCTTTGCCCAAAAGGAGAGTTTCAACACCACCTGAATTTCCAGTTGATCTTCCTGTTAGTGATGTTGGCTTGGTTAGCAGGAATTCATCACATTTAGATTCATTTCTGGATCCTGCCTTCATGTCCATGATCAAAGACCCCGATCAAAGGCGGATGGAGCAGTGGGAGAAAACTGCCGAAGCACAAAGAGGCTGGAATTGTGCTAAATTGATTGGATATGGCGACCTTGGTCGACCCACATTGTCTGCTGCCGAAGAATATTCTCTACACTCTAGATACCTGTCTAAAGCAAATTCCTTGAATCTTTCTGAAATTGCAGAAATGAAAATTGTCTATCGTGGTGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGGGGCCCACTTTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTATGTGGTGAAGGAGTTTGAGCCGTTAATACAGAAGCCTTTTTCTATTGTCTACTTCCACTCTGCTGCATCTTTGCAGGTGCAGCCAGACCTGGGTTGGATGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCATGCAATATATGTCCTTCACCCAACTTTCGGACTAAAAGCGGCAGTATTTGGACTTCAGATGTTTGTGGACAATGTGGTTTGGAAGAAAGTGGTATATGTTGATCGCCTTCTGCAGCTCTTCAGATACGTACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAGCATGACTTGGAAGTGAATGGAGGGACGGGTCTCATTGTGGATCCAAGAACAAAATATGTGTACAACAGACCATGA
>Glyma20g03330.1 sequence type=predicted peptide gene model=Glyma20g03330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYMPVATSATLRGGLPTDSGDSVVALDQVPRWNDADQALGFETSFSSSHFPDPLASPSRVDSGDGSESVSKFPVDDEVNSKIYLWRGNPWNLEVDAVVNSTNENMDEAHSSPGLHDAAGPGLAEECATLGGCRTGMAKVTKPYDLPARKIIHTVGPKYAIKYHNAAENALSHCYRSCLELLIENGLQSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKNNIIAVVFCTVSTTDTEIYKRLLPLYFPRDKHEEQVALSKLPADVGDENGETISDERKIRIKPLPKRRVSTPPEFPVDLPVSDVGLVSRNSSHLDSFLDPAFMSMIKDPDQRRMEQWEKTAEAQRGWNCAKLIGYGDLGRPTLSAAEEYSLHSRYLSKANSLNLSEIAEMKIVYRGGVDSEGHPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPFSIVYFHSAASLQVQPDLGWMRRLQQILGRKHQRNLHAIYVLHPTFGLKAAVFGLQMFVDNVVWKKVVYVDRLLQLFRYVPREQLTIPDFVFQHDLEVNGGTGLIVDPRTKYVYNRP*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||