SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G26580 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9185620-9187213 FORWARD LENGTH=493 | SoyBase | E_val: 3.00E-76 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_B9REG1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9REG1_RICCO | SoyBase | E_val: 6.00E-90 | ISS |
| UniRef100_C6TD13 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TD13_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g03230 not represented in the dataset |
Glyma20g03230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g026500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g03230.2 sequence type=CDS gene model=Glyma20g03230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTATAAGAGATGCCGTGAGGCTAATGAATTTGAGGATCTTTCTTTGAACAAGGCAAAACGTTTTGAATGCAACAATGAGCTGGTTTCATTAGCTGATATTGTTACGCCCAACAAGGCCTTTGCTAAGACTGTTATTAAAGGTGATGAAGATGGCTTTTACAACATTCAATGGTATGATCCACTTGAAACAGATGCTGCCAAAGAATCTCCATATAGTGGTGACAAGAATGGTAAAACCAGTGGCCACTTCCGCAGCTGTTCTAGTGAGGATGATACTGGTTCTGGGGCGACATCATTATCATCTGCTTCCTCAGATTGTTTGGAATTTGATACTCCGCAGAAAGTATTTGTTCCTTTGGATGATGACTATTTAGACTTTGATTGCTCACCTAGAAAATCAGTTCCCATTGGACCAAATCATCAAGCCACCATTCCTGTTTGGAGGGGTAAAGTGAATAAGATGTTGGAGTTAGGCATATATAATCATGACAGTCCCTCCTCTGGCTTAGTATCAGCTCATACTGTTGATGAAGATGAAGAGAGGCTCATGGGAACTTCTGTGCTCTCAATGGATGAGTTTAGCTTTCATTATTTTAGTAGTAATGAGATTGGACAAGGCAGGACAGAGTGTAACTGCATGGATCGTTGCTCCATCAGATGTGTTAGACAGCATGTTAGGGAAGCGCGTGAAAATTTGATGGAGACTCTTGGGGAGGAAAAATTTGTTAACTTGGGCTTTTGTGACATGGGAGAGGATGTTTCACGTCAATGGACTGAGGAAGAAGAAGACATGTTTCATGAGGTTGTCTACAGCAATCCTGCATCATTGGGTAGAAACTTTTGGAAGCATTTGTCAGTCACTTTCTCTTCTCGAACCAGTAAAGAAATTGTCAGCTACTATTTTAATGTTTTTATTCTGCGGAGGAGGGCTGCTCAGAACAGATCCAGATTTTTGGATATTGATAGTGATGATGATGAATGTCAAACAAGAAACTCTAGGATTTTTGGTTTTGAAAATTCTGATGATTCTGCCATTGAGTCTCTTGGTGATGAAGATGTCCGTGTGGAAAACCATGATAATTATTCTGATGAAGATGATGATGACGATAACACTGATGATGGAACTGAAGATAATGTTCATGGAGTAACTGGATGTGATATTGGAAACACCACTGAGATAGAGGGTGAGATTGATCAAAACCCATCAAATTCGAAGGTGAACTCACAGATTGAGCCTTGGAGTAATCCTGATGAGCATGTCAATGGGACTCCTGGAATCCTGAACTACAATATTGCTGTCGGGGATGACTCCTGTATGTCCTTCGAATGTGATGCCAATATGCATGTGTCTTGCCATTCTCATGGTTTAGGAGGTGCTAGTTCCGCTTTGCAAGCTAGGGGATATAATTGTAATCAGAGTCCACATACGCAAGGAAAACTTGATTTGTCCAGCAATGAGATGGATCATGTTTATTTGATGGAGCCCTGTGTTTCTAAAGATTGGTATCCTGGGTACTCAACATGTCCAACGCCAAGTACAGATTTAGACTTCTTACCTACCTCCAATTTGATTGAAGAGTTTTTTGGCTATGGTACTCTGGATAAAAAAGACCTGAAGTGA
>Glyma20g03230.2 sequence type=predicted peptide gene model=Glyma20g03230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGYKRCREANEFEDLSLNKAKRFECNNELVSLADIVTPNKAFAKTVIKGDEDGFYNIQWYDPLETDAAKESPYSGDKNGKTSGHFRSCSSEDDTGSGATSLSSASSDCLEFDTPQKVFVPLDDDYLDFDCSPRKSVPIGPNHQATIPVWRGKVNKMLELGIYNHDSPSSGLVSAHTVDEDEERLMGTSVLSMDEFSFHYFSSNEIGQGRTECNCMDRCSIRCVRQHVREARENLMETLGEEKFVNLGFCDMGEDVSRQWTEEEEDMFHEVVYSNPASLGRNFWKHLSVTFSSRTSKEIVSYYFNVFILRRRAAQNRSRFLDIDSDDDECQTRNSRIFGFENSDDSAIESLGDEDVRVENHDNYSDEDDDDDNTDDGTEDNVHGVTGCDIGNTTEIEGEIDQNPSNSKVNSQIEPWSNPDEHVNGTPGILNYNIAVGDDSCMSFECDANMHVSCHSHGLGGASSALQARGYNCNQSPHTQGKLDLSSNEMDHVYLMEPCVSKDWYPGYSTCPTPSTDLDFLPTSNLIEEFFGYGTLDKKDLK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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