Glyma20g03221 - SoyBase

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Report for Sequence Feature Glyma20g03221

Feature Type:	gene_model
Chromosome:	Gm20
Start:	2916447
stop:	2919245
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g03221

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39320	AT	Annotation by Michelle Graham. TAIR10: UDP-glucose 6-dehydrogenase family protein \| chr5:15743254-15744696 FORWARD LENGTH=480	SoyBase	E_val: 3.00E-154	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003979	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucose 6-dehydrogenase activity	SoyBase	N/A	ISS
GO:0016616	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0051287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NAD binding	SoyBase	N/A	ISS
KOG2666	KOG	UDP-glucose/GDP-mannose dehydrogenase	JGI		ISS
PTHR11374	Panther	UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE	JGI		ISS
PF00984	PFAM	UDP-glucose/GDP-mannose dehydrogenase family, central domain	JGI		ISS
PF03720	PFAM	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain	JGI		ISS
PF03721	PFAM	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain	JGI		ISS
UniRef100_I1JED0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UDP-glucose 6-dehydrogenase n=1 Tax=Glycine max RepID=I1JED0_SOYBN	SoyBase	E_val: 9.00E-162	ISS
UniRef100_I1JED0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucose 6-dehydrogenase n=1 Tax=Glycine max RepID=I1JED0_SOYBN	SoyBase	E_val: 9.00E-162	ISS

Expression Patterns of Glyma20g03221

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g03221 not represented in the dataset	Glyma20g03221 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g03221 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g026400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g03221

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g03221

Limit To All Plant Sequences

>Glyma20g03221.1   sequence type=CDS   gene model=Glyma20g03221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGCTGATGTCTCAAAATCAGACAAAATTGTGGTTGAGAAATCCACTGGTCCTGTGAAGACAGAAGAGGCAATTGAGAGAATCTTGACTCACAACAACAAAGGCATCAATTTCACAATTCTTTCAAATCCAGAGTTTCTTGCTAAGGGCACAACAATTGATGACCTATTCAAACCAGATAGGGTTCTCATTTGGGGTAGGGAGACCCCACAAGGGCAAAAGGTAATACAACCTCTCAAAGAACTTGCAGCCAGTACCTTTATGGCACAGAGGATCACTTCTGTGAATGCCATGTCAGCACTCTGTGAGACTATTGATGCTGATGTGTCAAGTGTTGGCTTTGGTGGCTCCTGCTTTCAGAAGGACATAATGAACTTGGTGTACATTTGTGAGTGCAATGGCCTTCCTAAGGTGCCAAATTATTGGAAGCAAGTTGTAAAAGTGAATGACTACCAGAAACCAAGATTTGTGAACAGGGTGAAGGACACTGGTGACACTAGGGAGACTTCAACAATTGATATGTGCAAGGGGCTTTTGGGAGACAAGGCCAAGTTGAGCATATATGACCCTCAAGTCACTGAAGACCAAATCACAAAGGATCTTTCAATGAGGAAGTTTGATAAGGACCACCCTGCACATCTTCAGCCACCAAGCCCTACTTCAATAAAGCTATTGTCTGTGGTTTGGGATGCTTATGATGCACTGAAGGATGCACATGGTGCTTGCATTCTCACCGAGTGGGATGCCATGCAGAAGCCAACATTTATATTTGATGGAAGGAATGTTGTGGATGTTAAGAAGGTAAGGGAAATTGGGTTCATTGTGTATGCCATTGGAAGGCCACTAGATCCATGGCTCAAGGACATGCCTTCAGTCGTGGCTTAA

Predicted protein sequences of Glyma20g03221

Limit To All Plant Sequences

>Glyma20g03221.1   sequence type=predicted peptide   gene model=Glyma20g03221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIADVSKSDKIVVEKSTGPVKTEEAIERILTHNNKGINFTILSNPEFLAKGTTIDDLFKPDRVLIWGRETPQGQKVIQPLKELAASTFMAQRITSVNAMSALCETIDADVSSVGFGGSCFQKDIMNLVYICECNGLPKVPNYWKQVVKVNDYQKPRFVNRVKDTGDTRETSTIDMCKGLLGDKAKLSIYDPQVTEDQITKDLSMRKFDKDHPAHLQPPSPTSIKLLSVVWDAYDALKDAHGACILTEWDAMQKPTFIFDGRNVVDVKKVREIGFIVYAIGRPLDPWLKDMPSVVA*

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