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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G32080 | AT | Annotation by Michelle Graham. TAIR10: purin-rich alpha 1 | chr2:13642716-13644036 REVERSE LENGTH=295 | SoyBase | E_val: 2.00E-165 | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0007033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuole organization | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| KOG3074 | KOG | Transcriptional regulator of the PUR family, single-stranded-DNA-binding | JGI | ISS | |
| PTHR12611 | Panther | PUR-TRANSCRIPTIONAL ACTIVATOR | JGI | ISS | |
| PF04845 | PFAM | PurA ssDNA and RNA-binding protein | JGI | ISS | |
| UniRef100_C6TG15 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TG15_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7JHJ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor Pur-alpha n=1 Tax=Medicago truncatula RepID=G7JHJ7_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma20g03020 not represented in the dataset |
Glyma20g03020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g35160 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g025100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g03020.2 sequence type=transcript gene model=Glyma20g03020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GACTTATTGGCTAATAAATTTGATGAATTTATGATGAGAAACTTGCAAATCCAGTAATTTACCAATCGCTACTAATTGACTCGTGCGGTGAAAAGATCCCATCAGAATGGATCTGGAAAACCACTGAACAAGAAGAAGAGTCTTCTTCGTTTAACCACCACATCGGAGAAACACAAACACACGCGCGCACACACACGTGCGTGGTGCAGACTCTCCAGTCTCACACACATGTGTCCGTTGCTGCTGTAACCGTCGACGAAGAAGAAGAAGAAAGAAATAAACCGTTTAAAGTAAAGCAAAATTCGTAAACCAAACAAACCCTTATGCGTGGTGACTAGTGAGTGACGACTCAGATCTGTTGCGGGGTTATCGAAATTGGTTATTGGCCGAGGGAGATGGAGGGGAACTCCGGTGGAGGAGGCGGCGGTGGCGGTGGAAACGACGTGGAATTGCTCTGCAAGACGCTGCAGGTGGAGCACAAGCTCTTCTACTTCGATCTGAAGGAGAATCCTCGCGGCCGCTACCTTAAGATTTCCGAGAAGACCTCCGCCACCAGGTCCACCATCATCGTCCCCTTCTCTGGCATTTCCTGGTTCCTCGATCTCTTCAATTACTACGTCAATTCCGACGACCAGGACCTCTTCAGCAAGGAATTGCAGCTCGACACCAAGGTTTTCTATTTTGACATTGGCGAGAATCGGAGGGGCCGTTTTTTGAAGGTGTCTGAAGCTTCTGTCAGCAGAAACCGTAGCACTATAATTGTTCCGGCTGGAAGCTCCAGGGATGAAGGATGGGCAGCATTCAGGAACATTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGCAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGTGCTGGCTTCATATCTGGTCATAGTACTCAACCTGCCACTTCTTCTGAGTTGAATGTGGACAGGTCTGTTGATTTGCCGCCTCAGGATGAAATTGGGAACTTGGGGGTCTCAAAAGTGATCAGGGCTGATCAGAAAAGATTCTTCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAGGGCTCAAGCAGTTTCATGAGATTGTTGGTCACTTTGTCGAAATCACAAAGGACCGAATTGAGGGAATGGCGGTTGCTAATGTTCGCACAATTGATCCCCCTCAAAGATGAATGCTAACTTGGGATAAGAATGGGTGTTGTCTTCGAGTCTGATTTGTGTTATTTTATTTTATTTTCCCTCAGCCTCCTTTCTTCTTCTCATATTGTTCTTCCATTAATGCTTTTGAAATAATGCAAACTCTGGTTGGTCAGCAGAATAATTTGAATTGCTTGGCAAGGTTAATATGAATAGGAATAACGGAAGAAAAAAAGGATCAGAGACTTGTACTTGTTTGGATAGTTTGGCACCCAAGCTACAATCTGTAATAATGTTTGATTGTTTATTTTGCGTTCCTTGCACAGATTTCGCATGGATTTAAGTTCTCATGCCTACCATATGTTAGGTTGGTGACTTAACTATTTTGTAGGGTTTGGTTTCCATCTAACAGCATGAACTTTGCTTTCATAGTGATATCTGTTTTATCGTCATTTATCTGTTTCATCTGTATTAAACACACCCTATGGAAGGAGGGATGTGGGGAATGCTTTTAGGAACGAAATTAGTTGTTGTTGCATGAAATATCTTGTTAGGACCATATCATTTTGTTCCATGGAAGTCAATGCA
>Glyma20g03020.1 sequence type=CDS gene model=Glyma20g03020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGGGAACTCCGGTGGAGGAGGCGGCGGTGGCGGTGGAAACGACGTGGAATTGCTCTGCAAGACGCTGCAGGTGGAGCACAAGCTCTTCTACTTCGATCTGAAGGAGAATCCTCGCGGCCGCTACCTTAAGATTTCCGAGAAGACCTCCGCCACCAGGTCCACCATCATCGTCCCCTTCTCTGGCATTTCCTGGTTCCTCGATCTCTTCAATTACTACGTCAATTCCGACGACCAGGACCTCTTCAGCAAGGAATTGCAGCTCGACACCAAGGTTTTCTATTTTGACATTGGCGAGAATCGGAGGGGCCGTTTTTTGAAGGTGTCTGAAGCTTCTGTCAGCAGAAACCGTAGCACTATAATTGTTCCGGCTGGAAGCTCCAGGGATGAAGGATGGGCAGCATTCAGGAACATTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGCAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGTGCTGGCTTCATATCTGGTCATAGTACTCAACCTGCCACTTCTTCTGAGTTGAATGTGGACAGGTCTGTTGATTTGCCGCCTCAGGATGAAATTGGGAACTTGGGGGTCTCAAAAGTGATCAGGGCTGATCAGAAAAGATTCTTCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAGGTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAGCAGTTTCATGAGATTGTTGGTCACTTTGTCGAAATCACAAAGGACCGAATTGAGGGAATGGCGGTTGCTAATGTTCGCACAATTGATCCCCCTCAAAGATGA >Glyma20g03020.2 sequence type=CDS gene model=Glyma20g03020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGGGAACTCCGGTGGAGGAGGCGGCGGTGGCGGTGGAAACGACGTGGAATTGCTCTGCAAGACGCTGCAGGTGGAGCACAAGCTCTTCTACTTCGATCTGAAGGAGAATCCTCGCGGCCGCTACCTTAAGATTTCCGAGAAGACCTCCGCCACCAGGTCCACCATCATCGTCCCCTTCTCTGGCATTTCCTGGTTCCTCGATCTCTTCAATTACTACGTCAATTCCGACGACCAGGACCTCTTCAGCAAGGAATTGCAGCTCGACACCAAGGTTTTCTATTTTGACATTGGCGAGAATCGGAGGGGCCGTTTTTTGAAGGTGTCTGAAGCTTCTGTCAGCAGAAACCGTAGCACTATAATTGTTCCGGCTGGAAGCTCCAGGGATGAAGGATGGGCAGCATTCAGGAACATTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGCAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGTGCTGGCTTCATATCTGGTCATAGTACTCAACCTGCCACTTCTTCTGAGTTGAATGTGGACAGGTCTGTTGATTTGCCGCCTCAGGATGAAATTGGGAACTTGGGGGTCTCAAAAGTGATCAGGGCTGATCAGAAAAGATTCTTCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAGGGCTCAAGCAGTTTCATGAGATTGTTGGTCACTTTGTCGAAATCACAAAGGACCGAATTGAGGGAATGGCGGTTGCTAATGTTCGCACAATTGATCCCCCTCAAAGATGAATGCTAA
>Glyma20g03020.1 sequence type=predicted peptide gene model=Glyma20g03020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGNSGGGGGGGGGNDVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYVNSDDQDLFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLFILPNQQNSESSEHLVGLSDDVGAGFISGHSTQPATSSELNVDRSVDLPPQDEIGNLGVSKVIRADQKRFFFDLGSNNRGHFLRISEVAGSDRSSIILPLSGLKQFHEIVGHFVEITKDRIEGMAVANVRTIDPPQR* >Glyma20g03020.2 sequence type=predicted peptide gene model=Glyma20g03020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGNSGGGGGGGGGNDVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYVNSDDQDLFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLFILPNQQNSESSEHLVGLSDDVGAGFISGHSTQPATSSELNVDRSVDLPPQDEIGNLGVSKVIRADQKRFFFDLGSNNRGHFLRISEGSSSFMRLLVTLSKSQRTELREWRLLMFAQLIPLKDEC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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