SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G56360 | AT | Annotation by Michelle Graham. TAIR10: calmodulin-binding protein | chr5:22823586-22827950 REVERSE LENGTH=647 | SoyBase | E_val: 0 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| KOG2397 | KOG | Protein kinase C substrate, 80 KD protein, heavy chain | JGI | ISS | |
| PTHR12630 | Panther | N-LINKED OLIGOSACCHARIDE PROCESSING | JGI | ISS | |
| PTHR12630:SF1 | Panther | PROTEIN KINASE C SUBSTRATE RELATED | JGI | ISS | |
| PF07915 | PFAM | Glucosidase II beta subunit-like protein | JGI | ISS | |
| UniRef100_G7JHL0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glucosidase ii beta subunit n=1 Tax=Medicago truncatula RepID=G7JHL0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DA37 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DA37 related cluster n=1 Tax=unknown RepID=UPI000233DA37 | SoyBase | E_val: 0 | ISS |
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Glyma20g02951 not represented in the dataset |
Glyma20g02951 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g35090 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g024500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g02951.2 sequence type=transcript gene model=Glyma20g02951 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCAAACTTGCTCTAAGTAGTTCGGGTTGGGCATGGCCCATCTTAAATTACAGTTGCTTCTCGAATCTCATTTTGACACTACAATAGGCCATAGTCGGAAACCGCAAGGTCGCTCCGCTCGCGTCGCCGCATAACACAACTTCCAATTTTCACAACCACCACCATTTAACACTTGATCTAACTACTCATAGATTACCACGGTATCATTATTCCCATTTTCAATTTTCAATTCACCTTCTTCCTCTGCCAGAGCATGAAGCTGCTGCGTCTTCGAATCCTCCTCATTGCTCTGCTTCTCATGTTGTGCGCCCCATTTTCATCTTCTTCCAAACCCAAAGACCCCTTCCTCGGCGTCGCCCCCGAAGATGACGACTATTACAAGTCTTCCGATGTAATAAGTTGTAAAGATGGATCCGGAAAATTCACCAAGGCTCAGTTCAATGATGATTTCTGCGATTGTGCTGATGGCACCGATGAACCTGGTACATCGGCATGTCCTGGTGGAAAATTCTATTGTCGGAATGCAGGACATTCTCCTGTTTACTTGTTTTCATCTAGAGTGAACGACGGAATTTGTGATTGCTGTGATGGAACCGATGAATACGATGGTCAAGTAAAGTGTCCAAATACCTGCTGGGAGGCTGGTAAAGTTGCTAGAGACAGACTGAAAAAAAAGATTGCCACTTATCAAGAGGGTGTCAAATTGCGAAAGCAAGAAATTGAACAAGCTAAAGTAGCTATGGAGAAGGATGAGGCCGAACTTTCAAAATTAAAAAAGGAAGAAAGTATACTTAAAGGGATCGTGAAACAGCTAAAGGATCATAAAGAACAAATAGATAAGGCAGAGGAGGAGGAGCGTTTACAGAAAGAAAAAGAAGAGAAGCAGAAAAGGGAGTCTGAGGAGAAGGCTAATGAAGCAAAAGATAAAGCTGATGAAGATACAGAGCATAGAAATGAAGCTGAAAAGCATTCAGATATTGAAGACAATACTCTAGAAAATAACCATGATAAAATAGAAAATCTAGAGGGTTCTCCTGCGGATCAGGATGAAGCAGGGGACAAATTAGCAGATGTACTTGATGATGATGATGATGATGATGATGATGAAGCCAGTGATAGTCATGGGAGTGAAGGATCTTTGCATAATAAAGTGGAAGAGAATGCAAAAGAAGCTGAGGAAGAACCTATTGTTAAATCTGAAACTGATATAAAGGTCAGAAACAAAGAGTCTTCTGATGAAATCATCAATAAGGGGAATGATGCATCTGAAAATACTGAGGGATTATCAAGGGAAGAATTGGGCCGGCTTGTTGCTTCACGTTGGACAGGAGAAAATACTGATAAGCCAAGTGCTGTACCTGATACAACATTAGACAATGAAGATCGGGAAGATCCAAAGGGGAGAAATAATGAGGAATATGAAGGCTATGCTTCTGAAACTGATGATGACAACAACAAATATGATGATGACAGCCACAAATACGACGATGAAGATGAAGTTGATGATGAATATCGAGAGGATGAGCATGATGACCTTTCTTCCTCCTACAAATCTGATTCTGATAATGAACCAGACTTGTCAGATAATCCTTCTTGGTTAGAGAAAATACAGAGAACTGTACGCAATATTTTTCAGGTTGTTAATTTATTCCAGGCTCCAGTGAACCAGACAGATGCTGCTCGTGTACGCAAGGAATATGATGAATCAAGTGCCAAGTTGTCGAAAATACAGTCTAGAATATCAAGTCTGAAGCAAAAGCTAAAACATGATTTTGGTCCAGCAAAGGAGTTTTATTCATTCTATGATCATTGCTTTGAGGGCAAGGAGAACAAGTACACTTACAAAGTCTGCCCCTATAAGCAGGCTTCTCAGGAGGAGGGTTATTCCAATACCCGTTTGGGGAGCTGGGACAAATTTGAGGATTCGTACAGAGTAATGGTGTTTTCTAATGGTGATAAATGCTGGAATGGTCCAGATAGGAGTTTGAAGGTCAAGTTAAGATGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAATATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAAGGAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTGGTAGTATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTATGCTAGAGCTTACACAAATATGATATCGGGTGAGGTTAGGGAGAGGCTAGAAGCTGATTTGACTTGGGGTTGGTAATCCTTGTGGTTGTCCAAGTTTGCAACATTCTAATATGACTCATCCCGCACATTTTTCCTTTATTGAACTCAATTACGAAATGGTCTGTGTGCCTCTCCTTGAAATTGTCCATTCCATACCAAAGGATGGATATTTATACTATGCAAGATACTGGACAGTCAGAATTTCTTGAGCCAAAATTATTTGTTGGAATGAGTTCACGTTATTATTGATTCTTACATGGATTTGTGCCATCTGGAATTTTCATATTTTGTTTGCGTGGCCTCTTGAGGAGAGTTAATATATATATATATATATATGGTTTGAG
>Glyma20g02951.1 sequence type=CDS gene model=Glyma20g02951 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCTGCTGCGTCTTCGAATCCTCCTCATTGCTCTGCTTCTCATGTTGTGCGCCCCATTTTCATCTTCTTCCAAACCCAAAGACCCCTTCCTCGGCGTCGCCCCCGAAGATGACGACTATTACAAGTCTTCCGATGTAATAAGTTGTAAAGATGGATCCGGAAAATTCACCAAGGCTCAGTTCAATGATGATTTCTGCGATTGTGCTGATGGCACCGATGAACCTGGTACATCGGCATGTCCTGGTGGAAAATTCTATTGTCGGAATGCAGGACATTCTCCTGTTTACTTGTTTTCATCTAGAGTGAACGACGGAATTTGTGATTGCTGTGATGGAACCGATGAATACGATGGTCAAGTAAAGTGTCCAAATACCTGCTGGGAGGCTGGTAAAGTTGCTAGAGACAGACTGAAAAAAAAGATTGCCACTTATCAAGAGGGTGTCAAATTGCGAAAGCAAGAAATTGAACAAGCTAAAGTAGCTATGGAGAAGGATGAGGCCGAACTTTCAAAATTAAAAAAGGAAGAAAGTATACTTAAAGGGATCGTGAAACAGCTAAAGGATCATAAAGAACAAATAGATAAGGCAGAGGAGGAGGAGCGTTTACAGAAAGAAAAAGAAGAGAAGCAGAAAAGGGAGTCTGAGGAGAAGGCTAATGAAGCAAAAGATAAAGCTGATGAAGATACAGAGCATAGAAATGAAGCTGAAAAGCATTCAGATATTGAAGACAATACTCTAGAAAATAACCATGATAAAATAGAAAATCTAGAGGGTTCTCCTGCGGATCAGGATGAAGCAGGGGACAAATTAGCAGATGTACTTGATGATGATGATGATGATGATGATGATGAAGCCAGTGATAGTCATGGGAGTGAAGGATCTTTGCATAATAAAGTGGAAGAGAATGCAAAAGAAGCTGAGGAAGAACCTATTGTTAAATCTGAAACTGATATAAAGGTCAGAAACAAAGAGTCTTCTGATGAAATCATCAATAAGGGGAATGATGCATCTGAAAATACTGAGGGATTATCAAGGGAAGAATTGGGCCGGCTTGTTGCTTCACGTTGGACAGGAGAAAATACTGATAAGCCAAGTGCTGTACCTGATACAACATTAGACAATGAAGATCGGGAAGATCCAAAGGGGAGAAATAATGAGGAATATGAAGGCTATGCTTCTGAAACTGATGATGACAACAACAAATATGATGATGACAGCCACAAATACGACGATGAAGATGAAGTTGATGATGAATATCGAGAGGATGAGCATGATGACCTTTCTTCCTCCTACAAATCTGATTCTGATAATGAACCAGACTTGTCAGATAATCCTTCTTGGTTAGAGAAAATACAGAGAACTGTACGCAATATTTTTCAGGTTGTTAATTTATTCCAGGCTCCAGTGAACCAGACAGATGCTGCTCGTGTACGCAAGGAATATGATGAATCAAGTGCCAAGTTGTCGAAAATACAGTCTAGAATATCAAGTCTGAAGCAAAAGCTAAAACATGATTTTGGTCCAGCAAAGGAGTTTTATTCATTCTATGATCATTGCTTTGAGGGCAAGGAGAACAAGTACACTTACAAAGTCTGCCCCTATAAGCAGGCTTCTCAGGAGGAGGGTTATTCCAATACCCGTTTGGGGAGCTGGGACAAATTTGAGGATTCGTACAGAGTAATGGTGTTTTCTAATGGTGATAAATGCTGGAATGGTCCAGATAGGAGTTTGAAGGTCAAGTTAAGATGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAATATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAAGGAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCATGACGAGTTGTGA >Glyma20g02951.2 sequence type=CDS gene model=Glyma20g02951 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCTGCTGCGTCTTCGAATCCTCCTCATTGCTCTGCTTCTCATGTTGTGCGCCCCATTTTCATCTTCTTCCAAACCCAAAGACCCCTTCCTCGGCGTCGCCCCCGAAGATGACGACTATTACAAGTCTTCCGATGTAATAAGTTGTAAAGATGGATCCGGAAAATTCACCAAGGCTCAGTTCAATGATGATTTCTGCGATTGTGCTGATGGCACCGATGAACCTGGTACATCGGCATGTCCTGGTGGAAAATTCTATTGTCGGAATGCAGGACATTCTCCTGTTTACTTGTTTTCATCTAGAGTGAACGACGGAATTTGTGATTGCTGTGATGGAACCGATGAATACGATGGTCAAGTAAAGTGTCCAAATACCTGCTGGGAGGCTGGTAAAGTTGCTAGAGACAGACTGAAAAAAAAGATTGCCACTTATCAAGAGGGTGTCAAATTGCGAAAGCAAGAAATTGAACAAGCTAAAGTAGCTATGGAGAAGGATGAGGCCGAACTTTCAAAATTAAAAAAGGAAGAAAGTATACTTAAAGGGATCGTGAAACAGCTAAAGGATCATAAAGAACAAATAGATAAGGCAGAGGAGGAGGAGCGTTTACAGAAAGAAAAAGAAGAGAAGCAGAAAAGGGAGTCTGAGGAGAAGGCTAATGAAGCAAAAGATAAAGCTGATGAAGATACAGAGCATAGAAATGAAGCTGAAAAGCATTCAGATATTGAAGACAATACTCTAGAAAATAACCATGATAAAATAGAAAATCTAGAGGGTTCTCCTGCGGATCAGGATGAAGCAGGGGACAAATTAGCAGATGTACTTGATGATGATGATGATGATGATGATGATGAAGCCAGTGATAGTCATGGGAGTGAAGGATCTTTGCATAATAAAGTGGAAGAGAATGCAAAAGAAGCTGAGGAAGAACCTATTGTTAAATCTGAAACTGATATAAAGGTCAGAAACAAAGAGTCTTCTGATGAAATCATCAATAAGGGGAATGATGCATCTGAAAATACTGAGGGATTATCAAGGGAAGAATTGGGCCGGCTTGTTGCTTCACGTTGGACAGGAGAAAATACTGATAAGCCAAGTGCTGTACCTGATACAACATTAGACAATGAAGATCGGGAAGATCCAAAGGGGAGAAATAATGAGGAATATGAAGGCTATGCTTCTGAAACTGATGATGACAACAACAAATATGATGATGACAGCCACAAATACGACGATGAAGATGAAGTTGATGATGAATATCGAGAGGATGAGCATGATGACCTTTCTTCCTCCTACAAATCTGATTCTGATAATGAACCAGACTTGTCAGATAATCCTTCTTGGTTAGAGAAAATACAGAGAACTGTACGCAATATTTTTCAGGTTGTTAATTTATTCCAGGCTCCAGTGAACCAGACAGATGCTGCTCGTGTACGCAAGGAATATGATGAATCAAGTGCCAAGTTGTCGAAAATACAGTCTAGAATATCAAGTCTGAAGCAAAAGCTAAAACATGATTTTGGTCCAGCAAAGGAGTTTTATTCATTCTATGATCATTGCTTTGAGGGCAAGGAGAACAAGTACACTTACAAAGTCTGCCCCTATAAGCAGGCTTCTCAGGAGGAGGGTTATTCCAATACCCGTTTGGGGAGCTGGGACAAATTTGAGGATTCGTACAGAGTAATGGTGTTTTCTAATGGTGATAAATGCTGGAATGGTCCAGATAGGAGTTTGAAGGTCAAGTTAAGATGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAATATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAAGGAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCATGACGAGTTGTGA
>Glyma20g02951.1 sequence type=predicted peptide gene model=Glyma20g02951 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLLRLRILLIALLLMLCAPFSSSSKPKDPFLGVAPEDDDYYKSSDVISCKDGSGKFTKAQFNDDFCDCADGTDEPGTSACPGGKFYCRNAGHSPVYLFSSRVNDGICDCCDGTDEYDGQVKCPNTCWEAGKVARDRLKKKIATYQEGVKLRKQEIEQAKVAMEKDEAELSKLKKEESILKGIVKQLKDHKEQIDKAEEEERLQKEKEEKQKRESEEKANEAKDKADEDTEHRNEAEKHSDIEDNTLENNHDKIENLEGSPADQDEAGDKLADVLDDDDDDDDDEASDSHGSEGSLHNKVEENAKEAEEEPIVKSETDIKVRNKESSDEIINKGNDASENTEGLSREELGRLVASRWTGENTDKPSAVPDTTLDNEDREDPKGRNNEEYEGYASETDDDNNKYDDDSHKYDDEDEVDDEYREDEHDDLSSSYKSDSDNEPDLSDNPSWLEKIQRTVRNIFQVVNLFQAPVNQTDAARVRKEYDESSAKLSKIQSRISSLKQKLKHDFGPAKEFYSFYDHCFEGKENKYTYKVCPYKQASQEEGYSNTRLGSWDKFEDSYRVMVFSNGDKCWNGPDRSLKVKLRCGLKNEITDVDEPSRCEYVAVLSTPTLCQEERLKELQLKLDLLNSEIPANHDEL* >Glyma20g02951.2 sequence type=predicted peptide gene model=Glyma20g02951 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLLRLRILLIALLLMLCAPFSSSSKPKDPFLGVAPEDDDYYKSSDVISCKDGSGKFTKAQFNDDFCDCADGTDEPGTSACPGGKFYCRNAGHSPVYLFSSRVNDGICDCCDGTDEYDGQVKCPNTCWEAGKVARDRLKKKIATYQEGVKLRKQEIEQAKVAMEKDEAELSKLKKEESILKGIVKQLKDHKEQIDKAEEEERLQKEKEEKQKRESEEKANEAKDKADEDTEHRNEAEKHSDIEDNTLENNHDKIENLEGSPADQDEAGDKLADVLDDDDDDDDDEASDSHGSEGSLHNKVEENAKEAEEEPIVKSETDIKVRNKESSDEIINKGNDASENTEGLSREELGRLVASRWTGENTDKPSAVPDTTLDNEDREDPKGRNNEEYEGYASETDDDNNKYDDDSHKYDDEDEVDDEYREDEHDDLSSSYKSDSDNEPDLSDNPSWLEKIQRTVRNIFQVVNLFQAPVNQTDAARVRKEYDESSAKLSKIQSRISSLKQKLKHDFGPAKEFYSFYDHCFEGKENKYTYKVCPYKQASQEEGYSNTRLGSWDKFEDSYRVMVFSNGDKCWNGPDRSLKVKLRCGLKNEITDVDEPSRCEYVAVLSTPTLCQEERLKELQLKLDLLNSEIPANHDEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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