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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G26370 | AT | Annotation by Michelle Graham. TAIR10: antitermination NusB domain-containing protein | chr4:13334099-13336153 REVERSE LENGTH=301 | SoyBase | E_val: 2.00E-104 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| PF01029 | PFAM | NusB family | JGI | ISS | |
| UniRef100_I1NDH0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NDH0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q93XY7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Antitermination NusB domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q93XY7_ARATH | SoyBase | E_val: 9.00E-102 | ISS |
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Glyma20g02940 not represented in the dataset |
Glyma20g02940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g35080 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g024400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g02940.2 sequence type=transcript gene model=Glyma20g02940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGCTAATAAGGTGTGAGATATTTGCAATTATCTTGGGTTGCAATGGAGGGAGTGTTGCTTCCCGTGTGTCCTTCACCTTCTTCTTGCTCTGCAACTCCTAAACCCAGAATCCCCATTCCGCTACGCTCTTCTTTCCCTTCTCCATTATTACACAACCGTTTCTTCTCCCAAAACGCAGCGTTTTCCCTTCGCAACTCTCTCCGCACTTCCACCTTCGCACTCGCGCAACACGAAGCTCCCGTTCTGGGCAAACCCGATAACAACAACAACTCTTCACCCTATCTTCCCAAAATCGATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGAGTTTCGGAGGGCCGCCTGTTACTGTTGGATCGGACGAAGAAGCAAATGAGCTACTGCGGCACATTGAAGAAGAGTCTGCCATTGAAGCAGAAGTCCTTACAGCTCCTCCAAAGCTGGTATACAACAAACTGATTTTAAGATTCACCAAGAAACTATTGGTTGCAGTCAGGGATACATGGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAGAATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATTAACGGCTGTCTCCGCACATTTTTCCGAGAACTGGAGCTTGAAGCATCGAATAACCAGGAAATATCACCTATGGGGGTTTGATAATTTGCATATTGACCTGTAGACAAGGCCTGAGTTAGGAATCGTGTTGTTTGAAACTGGTAGAGTTATTATGACATTTTGTTTTTACAGCAGTTATTATGACATTGCAATATTGTAATCGTGTATATGTATATTTTATGTATGCTAGCTCGTGGGATTTGTAATAAATTTTGTTTAAGTTAAAGAACTTTTGAAATTTAATTTAATTAAGTACTTTTGAAACATGGTACTACAATTA
>Glyma20g02940.1 sequence type=CDS gene model=Glyma20g02940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGGAGTGTTGCTTCCCGTGTGTCCTTCACCTTCTTCTTGCTCTGCAACTCCTAAACCCAGAATCCCCATTCCGCTACGCTCTTCTTTCCCTTCTCCATTATTACACAACCGTTTCTTCTCCCAAAACGCAGCGTTTTCCCTTCGCAACTCTCTCCGCACTTCCACCTTCGCACTCGCGCAACACGAAGCTCCCGTTCTGGGCAAACCCGATAACAACAACAACTCTTCACCCTATCTTCCCAAAATCGATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGAGTTTCGGAGGGCCGCCTGTTACTGTTGGATCGGACGAAGAAGCAAATGAGCTACTGCGGCACATTGAAGAAGAGTCTGCCATTGAAGCAGAAGTCCTTACAGCTCCTCCAAAGCTGGTATACAACAAACTGATTTTAAGATTCACCAAGAAACTATTGGTTGCAGTCAGGGATACATGGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAGAATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATTAACGGCTGTCTCCGCACATTTTTCCGAGAACTGGAGCTTGAAGCATCGAATAACCAGGTTTAG >Glyma20g02940.2 sequence type=CDS gene model=Glyma20g02940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGGAGTGTTGCTTCCCGTGTGTCCTTCACCTTCTTCTTGCTCTGCAACTCCTAAACCCAGAATCCCCATTCCGCTACGCTCTTCTTTCCCTTCTCCATTATTACACAACCGTTTCTTCTCCCAAAACGCAGCGTTTTCCCTTCGCAACTCTCTCCGCACTTCCACCTTCGCACTCGCGCAACACGAAGCTCCCGTTCTGGGCAAACCCGATAACAACAACAACTCTTCACCCTATCTTCCCAAAATCGATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGAGTTTCGGAGGGCCGCCTGTTACTGTTGGATCGGACGAAGAAGCAAATGAGCTACTGCGGCACATTGAAGAAGAGTCTGCCATTGAAGCAGAAGTCCTTACAGCTCCTCCAAAGCTGGTATACAACAAACTGATTTTAAGATTCACCAAGAAACTATTGGTTGCAGTCAGGGATACATGGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAGAATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATTAACGGCTGTCTCCGCACATTTTTCCGAGAACTGGAGCTTGAAGCATCGAATAACCAGGAAATATCACCTATGGGGGTTTGA
>Glyma20g02940.1 sequence type=predicted peptide gene model=Glyma20g02940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGVLLPVCPSPSSCSATPKPRIPIPLRSSFPSPLLHNRFFSQNAAFSLRNSLRTSTFALAQHEAPVLGKPDNNNNSSPYLPKIDKTGRFCSPRAARELALSIIYAACLEGMDPVRLFEKRMNARREAGYKFNEEKLLEYNHMSFGGPPVTVGSDEEANELLRHIEEESAIEAEVLTAPPKLVYNKLILRFTKKLLVAVRDTWDSHVLVINKIAPQNWKNEPAAKILELSILHLAMSEMEVLETRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFFRELELEASNNQV* >Glyma20g02940.2 sequence type=predicted peptide gene model=Glyma20g02940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGVLLPVCPSPSSCSATPKPRIPIPLRSSFPSPLLHNRFFSQNAAFSLRNSLRTSTFALAQHEAPVLGKPDNNNNSSPYLPKIDKTGRFCSPRAARELALSIIYAACLEGMDPVRLFEKRMNARREAGYKFNEEKLLEYNHMSFGGPPVTVGSDEEANELLRHIEEESAIEAEVLTAPPKLVYNKLILRFTKKLLVAVRDTWDSHVLVINKIAPQNWKNEPAAKILELSILHLAMSEMEVLETRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFFRELELEASNNQEISPMGV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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